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See:
Description
Class Summary | |
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Calculator | Calculates the likelihood for different parameter values. |
Calculator.SiteCalculator | Calculates the likelihood of a single site. |
ConfidenceInterval | Used to calculate congfidence intervals for a parameter. |
Likelihood | Stores the results of a likelihood calculation. |
Likelihood.NodeLikelihood | Stores the results of a likelihood claculation for a single node in a tree. |
Likelihood.RateLikelihood | Stores the result of the likelihood calculations for a single site and a single rate class. |
Likelihood.SiteLikelihood | Stored the result of a likelihood calculation for a single site |
Probabilities | Stores the values of each transition, frequency etc for one set of parameters. |
Exception Summary | |
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Likelihood.LikelihoodException | Exception related to a likelihood calculation |
Provides classes for calculating the likelihood of a tree given a model and an alignment. There are clases for calculating the likelihood, storing the result, claculating confidence intervals.
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