Package Ancestors

Provides classed to calculate ancestral reconstruction.

See:
          Description

Class Summary
AncestralJoint Abstract class that the two different ways of doing ancestral reconstruction extend.
AncestralJointBB Class to perform joint ancestral reconstrion using the method of Pupko 2002 slightly modified
AncestralJointDP Class to perform joint ancestral reconstrion using the method of Pupko 2000
AncestralMarginal Class to perform marginal reconstruction of internal nodes.
 

Exception Summary
AncestralException Exception related to ancestral reconstruction
 

Package Ancestors Description

Provides classed to calculate ancestral reconstruction. Classes are avaliable to do either joint or marginal reconstruction.