|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use Likelihood | |
---|---|
Likelihood | Provides classes for calculating the likelihood of a tree given a model and an alignment. |
Optimizers | Provides classes for optimising a likelihood. |
Classes in Likelihood used by Likelihood | |
---|---|
Calculator
Calculates the likelihood for different parameter values. |
|
Likelihood
Stores the results of a likelihood calculation. |
|
Likelihood.LikelihoodException
Exception related to a likelihood calculation |
|
Likelihood.NodeLikelihood
Stores the results of a likelihood claculation for a single node in a tree. |
|
Likelihood.RateLikelihood
Stores the result of the likelihood calculations for a single site and a single rate class. |
|
Likelihood.SiteLikelihood
Stored the result of a likelihood calculation for a single site |
|
Probabilities
Stores the values of each transition, frequency etc for one set of parameters. |
Classes in Likelihood used by Optimizers | |
---|---|
Calculator
Calculates the likelihood for different parameter values. |
|
Likelihood
Stores the results of a likelihood calculation. |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |