public class DuplicationModelFactory
extends java.lang.Object
Modifier and Type | Method and Description |
---|---|
static Model |
BDI_Gamma(Parameters p,
int num,
int numCats)
Creates a simple BDI model with gamma-distributed rate
across sites
|
static Model |
BDI(Parameters p,
int num)
Creates a simple BDI model
|
static Model |
Parsimony_Gamma(Parameters p,
int num,
int numCats)
Creates a simple parsimony-style model with gamma-distributed rate
across sites
|
static Model |
Parsimony(Parameters p,
int num)
Creates a simple parsimony-style model
|
public static Model Parsimony(Parameters p, int num)
p
- Parameters structure to add the model parameters to (none in
this case but for consistency this is left here)num
- The maximum family sizepublic static Model Parsimony_Gamma(Parameters p, int num, int numCats)
p
- Parameters structure to add the model parameters tonum
- The maximum family sizenumCats
- The number of gamma categories to usepublic static Model BDI(Parameters p, int num)
p
- Parameters structure to add the model parameters tonum
- The maximum family sizepublic static Model BDI_Gamma(Parameters p, int num, int numCats)
p
- Parameters structure to add the model parameters tonum
- The maximum family sizenumCats
- The number of gamma categories to use