- Likelihood - package Likelihood
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Provides classes for calculating the likelihood of a tree given a model and
an alignment.
- Likelihood - Class in Likelihood
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Stores the results of a likelihood calculation.
- Likelihood.LikelihoodException - Exception in Likelihood
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Exception related to a likelihood calculation
- Likelihood.LikelihoodException(String) - Constructor for exception Likelihood.Likelihood.LikelihoodException
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Constructor
- Likelihood.NodeLikelihood - Class in Likelihood
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Stores the results of a likelihood claculation for a single node in a tree.
- Likelihood.RateLikelihood - Class in Likelihood
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Stores the result of the likelihood calculations for a single site and
a single rate class.
- Likelihood.SiteLikelihood - Class in Likelihood
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Stored the result of a likelihood calculation for a single site
- lower() - Method in class Utils.Range
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Gets the lower value
- LUDecomposition - Class in Maths
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LU Decomposition.
- LUDecomposition(SquareMatrix) - Constructor for class Maths.LUDecomposition
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LU Decomposition