Package | Description |
---|---|
Ancestors |
Provides classed to calculate ancestral reconstruction.
|
Constraints |
Provides classes to constrain the state of internal nodes.
|
Likelihood |
Provides classes for calculating the likelihood of a tree given a model and
an alignment.
|
Optimizers |
Provides classes for optimising a likelihood.
|
Simulations |
Provides a class to create simulate data.
|
Trees |
Provides classes to define a tree and any constraints on that tree.
|
Class and Description |
---|
Tree
Represents a phylogenetic tree.
|
TreeException
Exception thrown when there is a problem with a tree
|
Class and Description |
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Tree
Represents a phylogenetic tree.
|
TreeException
Exception thrown when there is a problem with a tree
|
Class and Description |
---|
Branch
Represents a branch in a tree
|
Tree
Represents a phylogenetic tree.
|
TreeException
Exception thrown when there is a problem with a tree
|
Class and Description |
---|
TreeException
Exception thrown when there is a problem with a tree
|
Class and Description |
---|
Tree
Represents a phylogenetic tree.
|
TreeException
Exception thrown when there is a problem with a tree
|
Class and Description |
---|
Branch
Represents a branch in a tree
|
Tree
Represents a phylogenetic tree.
|
TreeException
Exception thrown when there is a problem with a tree
|