Package | Description |
---|---|
Constraints |
Provides classes to constrain the state of internal nodes.
|
Likelihood |
Provides classes for calculating the likelihood of a tree given a model and
an alignment.
|
Modifier and Type | Method and Description |
---|---|
SiteConstraints |
SiteConstraints.clone() |
SiteConstraints |
Constrainer.getConstraints(Tree t,
Site s)
Gets the consraints on an the external nodes of a site given the tree
and the state of the leafs.
|
SiteConstraints |
NoConstraints.getConstraints(Tree t,
Site s) |
Constructor and Description |
---|
Calculator.SiteCalculator(Site s,
Tree t,
SiteConstraints con,
Probabilities tp)
Standard constructor
|