Package | Description |
---|---|
Likelihood |
Provides classes for calculating the likelihood of a tree given a model and
an alignment.
|
Modifier and Type | Method and Description |
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java.lang.Double |
Likelihood.NodeLikelihood.getLikelihood(java.lang.String state)
Returns the partial likelihood for a given state
|
Likelihood.SiteLikelihood |
Likelihood.getMissingLikelihood(Site s)
Gets the likelihood result for a given missing site
|
Likelihood.NodeLikelihood |
Likelihood.RateLikelihood.getNodeLikelihood(java.lang.String node)
Returns the likelihood results for a given node on the tree
|
Likelihood.RateLikelihood |
Likelihood.SiteLikelihood.getRateLikelihood(RateCategory rate)
Get the likelihood for a single rate class
|
Likelihood.SiteLikelihood |
Likelihood.getSiteLikelihood(Site s)
Gets the likelihood result for a given site
|