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implemented()
- Method in interface Maths.
FunctionParser
Returns a list of function names that this class can calculate
index(double[])
- Static method in class Utils.
Array1D
Returns indexes from the input array in rank order.
InputException
- Exception in
Exceptions
General excpetion for an exeption in or about an input file
InputException(String, String, String, Throwable)
- Constructor for exception Exceptions.
InputException
Default constructor
inverse()
- Method in class Maths.
SquareMatrix
Calculates the inverse of this matrix and returns a new matrix as the result.
isExternal(Branch)
- Method in class Trees.
Tree
Tests whether the given branch is an external branch (i.e.
isNonsingular()
- Method in class Maths.
LUDecomposition
Is the matrix nonsingular?
isSet(String)
- Method in class Utils.
SetSettings
Tests whether a root level setting has been set
isSet(String, String)
- Method in class Utils.
SetSettings
Tests whether a setting within a groups has been set
iterator()
- Method in class Alignments.
Alignment
iterator()
- Method in class Models.
Model
iterator()
- Method in class Parameters.
Parameters
iterator()
- Method in class Trees.
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