|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.ObjectModels.DuplicationModelFactory
public class DuplicationModelFactory
A factory for easing the creation of some simple gene-family models
Method Summary | |
---|---|
static Model |
BDI_Gamma(Parameters p,
int num,
int numCats)
Creates a simple BDI model with gamma-distributed rate across sites |
static Model |
BDI(Parameters p,
int num)
Creates a simple BDI model |
static Model |
Parsimony_Gamma(Parameters p,
int num,
int numCats)
Creates a simple parsimony-style model with gamma-distributed rate across sites |
static Model |
Parsimony(Parameters p,
int num)
Creates a simple parsimony-style model |
Methods inherited from class java.lang.Object |
---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Method Detail |
---|
public static Model Parsimony(Parameters p, int num)
p
- Parameters structure to add the model parameters to (none in
this case but for consistency this is left here)num
- The maximum family size
public static Model Parsimony_Gamma(Parameters p, int num, int numCats)
p
- Parameters structure to add the model parameters tonum
- The maximum family sizenumCats
- The number of gamma categories to use
public static Model BDI(Parameters p, int num)
p
- Parameters structure to add the model parameters tonum
- The maximum family size
public static Model BDI_Gamma(Parameters p, int num, int numCats)
p
- Parameters structure to add the model parameters tonum
- The maximum family sizenumCats
- The number of gamma categories to use
|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |