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java.lang.Objectjava.lang.Throwable
java.lang.Exception
Exceptions.GeneralException
Alignments.AlignmentException
public class AlignmentException
Exception related to an alignment (currently only input errors)
Nested Class Summary |
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Nested classes/interfaces inherited from class Exceptions.GeneralException |
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GeneralException.Debug |
Constructor Summary | |
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AlignmentException(java.lang.String msg)
Constructor for when there is a problem unrelated to an input file |
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AlignmentException(java.lang.String location,
java.lang.String text,
java.lang.String reason,
java.lang.Throwable cause)
Constructor for when there is a problem in the input file |
Method Summary |
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Methods inherited from class Exceptions.GeneralException |
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setDebug, toString |
Methods inherited from class java.lang.Throwable |
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fillInStackTrace, getCause, getLocalizedMessage, getMessage, getStackTrace, initCause, printStackTrace, printStackTrace, printStackTrace, setStackTrace |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
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public AlignmentException(java.lang.String msg)
msg
- The cause of the problempublic AlignmentException(java.lang.String location, java.lang.String text, java.lang.String reason, java.lang.Throwable cause)
location
- Information on the location in the filetext
- The text that caused the problemreason
- Why the text was problematiccause
- The Throwable that caused the problem (if applicable)
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