Uses of Package
Parameters

Packages that use Parameters
Ancestors Provides classed to calculate ancestral reconstruction. 
Likelihood Provides classes for calculating the likelihood of a tree given a model and an alignment. 
Models Provides classes for defing a phylogenetic model. 
Optimizers Provides classes for optimising a likelihood. 
Parameters Provides classes for defining parameters used in the various calculations. 
Simulations Provides a class to create simulate data. 
Trees Provides classes to define a tree and any constraints on that tree. 
 

Classes in Parameters used by Ancestors
Parameters
          Represents a set of parameters
Parameters.ParameterException
          Exception related to the parameters
 

Classes in Parameters used by Likelihood
Parameter
          Represents a parameter of a model
Parameters
          Represents a set of parameters
Parameters.ParameterException
          Exception related to the parameters
 

Classes in Parameters used by Models
Parameters
          Represents a set of parameters
 

Classes in Parameters used by Optimizers
Parameters
          Represents a set of parameters
Parameters.ParameterException
          Exception related to the parameters
 

Classes in Parameters used by Parameters
Parameter
          Represents a parameter of a model
Parameters
          Represents a set of parameters
Parameters.ParameterException
          Exception related to the parameters
 

Classes in Parameters used by Simulations
Parameters
          Represents a set of parameters
Parameters.ParameterException
          Exception related to the parameters
 

Classes in Parameters used by Trees
Parameters
          Represents a set of parameters
Parameters.ParameterException
          Exception related to the parameters