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See:
Description
Packages | |
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Alignments | Provides class for dealing with "alignments" and the sites in an alignment. |
Ancestors | Provides classed to calculate ancestral reconstruction. |
Constraints | Provides classes to constrain the state of internal nodes. |
Exceptions | Provides exceptions that are common across the package. |
Executable | Provides a general driver executable and an example executable |
Likelihood | Provides classes for calculating the likelihood of a tree given a model and an alignment. |
Maths | Provides maths classes. |
Models | Provides classes for defing a phylogenetic model. |
Optimizers | Provides classes for optimising a likelihood. |
Parameters | Provides classes for defining parameters used in the various calculations. |
Simulations | Provides a class to create simulate data. |
Trees | Provides classes to define a tree and any constraints on that tree. |
Utils | Provides various utility classes. |
This library provides classes to perform likelihood calculations on phylogenetic
trees.
It includes class that allow computation of the following:
Executable
package contains two executable - a general purpose driver
and some example code that shows how to do some simple computation.
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