Uses of Class
Likelihood.Likelihood.LikelihoodException

Packages that use Likelihood.LikelihoodException
Likelihood Provides classes for calculating the likelihood of a tree given a model and an alignment. 
 

Uses of Likelihood.LikelihoodException in Likelihood
 

Methods in Likelihood that throw Likelihood.LikelihoodException
 java.lang.Double Likelihood.NodeLikelihood.getLikelihood(java.lang.String state)
          Returns the partial likelihood for a given state
 Likelihood.SiteLikelihood Likelihood.getMissingLikelihood(Site s)
          Gets the likelihood result for a given missing site
 Likelihood.NodeLikelihood Likelihood.RateLikelihood.getNodeLikelihood(java.lang.String node)
          Returns the likelihood results for a given node on the tree
 Likelihood.RateLikelihood Likelihood.SiteLikelihood.getRateLikelihood(RateCategory rate)
          Get the likelihood for a single rate class
 Likelihood.SiteLikelihood Likelihood.getSiteLikelihood(Site s)
          Gets the likelihood result for a given site