Uses of Class
Ancestors.AncestralException

Packages that use AncestralException
Ancestors Provides classed to calculate ancestral reconstruction. 
 

Uses of AncestralException in Ancestors
 

Methods in Ancestors that throw AncestralException
abstract  Alignment AncestralJoint.calculate(Parameters params)
          Calculates the reconstruction
 Alignment AncestralJointBB.calculate(Parameters p)
           
 Alignment AncestralJointDP.calculate(Parameters params)
           
 double AncestralMarginal.SiteResult.getProbability(java.lang.String node, java.lang.String state)
          Gets thr probability of a given state at a given node
 AncestralMarginal.SiteResult AncestralMarginal.Result.getSiteResult(Site s)
          Gets the site results for a given site