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Likelihood
- package Likelihood
Provides classes for calculating the likelihood of a tree given a model and an alignment.
Likelihood
- Class in
Likelihood
Stores the results of a likelihood calculation.
Likelihood.LikelihoodException
- Exception in
Likelihood
Exception related to a likelihood calculation
Likelihood.LikelihoodException(String)
- Constructor for exception Likelihood.
Likelihood.LikelihoodException
Constructor
Likelihood.NodeLikelihood
- Class in
Likelihood
Stores the results of a likelihood claculation for a single node in a tree.
Likelihood.RateLikelihood
- Class in
Likelihood
Stores the result of the likelihood calculations for a single site
and
a single rate class.
Likelihood.SiteLikelihood
- Class in
Likelihood
Stored the result of a likelihood calculation for a single site
lower()
- Method in class Utils.
Range
Gets the lower value
LUDecomposition
- Class in
Maths
LU Decomposition.
LUDecomposition(SquareMatrix)
- Constructor for class Maths.
LUDecomposition
LU Decomposition
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