Uses of Package
Maths

Packages that use Maths
Likelihood Provides classes for calculating the likelihood of a tree given a model and an alignment. 
Maths Provides maths classes. 
Models Provides classes for defing a phylogenetic model. 
 

Classes in Maths used by Likelihood
SquareMatrix
          Represents a square matrix.
 

Classes in Maths used by Maths
CompiledFunction
          Represents a mahematical function, variable or constant
EigenvalueDecomposition.ConvergenceException
          Exception for when the Eigendecomposition does not converge
FunctionParser
          Interface for a function parser.
NoSuchFunction
          Exception that is thrown when a function has not been defined
NoSuchVariable
          Exception that is thrown when a function has not been defined
SquareMatrix
          Represents a square matrix.
SquareMatrix.Calculation
          Enumeration of the possible ways of calculating the matrix exponential
SquareMatrix.SquareMatrixException
          Exception thrown when there is a problem with a SquareMatrix operation
WrongNumberOfVariables
          Exception that is thrown if a function is passed the wrong number of variables
 

Classes in Maths used by Models
SquareMatrix
          Represents a square matrix.