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Packages that use Likelihood.LikelihoodException | |
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Likelihood | Provides classes for calculating the likelihood of a tree given a model and an alignment. |
Uses of Likelihood.LikelihoodException in Likelihood |
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Methods in Likelihood that throw Likelihood.LikelihoodException | |
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double |
Likelihood.NodeLikelihood.getLikelihood(java.lang.String state)
Returns the partial likelihood for a given state |
Likelihood.SiteLikelihood |
Likelihood.getMissingLikelihood(Site s)
Gets the likelihood result for a given missing site |
Likelihood.NodeLikelihood |
Likelihood.RateLikelihood.getNodeLikelihood(java.lang.String node)
Returns the likelihood results for a given node on the tree |
Likelihood.RateLikelihood |
Likelihood.SiteLikelihood.getRateLikelihood(RateCategory rate)
Get the likelihood for a single rate class |
Likelihood.SiteLikelihood |
Likelihood.getSiteLikelihood(Site s)
Gets the likelihood result for a given site |
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