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Packages that use Likelihood.NodeLikelihood | |
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Alignments | Provides class for dealing with "alignments" and the sites in an alignment. |
Likelihood | Provides classes for calculating the likelihood of a tree given a model and an alignment. |
Uses of Likelihood.NodeLikelihood in Alignments |
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Methods in Alignments that return types with arguments of type Likelihood.NodeLikelihood | |
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ArrayMap<java.lang.String,Likelihood.NodeLikelihood> |
Site.getInitialNodeLikelihoods(Tree t,
ArrayMap<java.lang.String,java.lang.Integer> map,
SiteConstraints scon)
Gdets initial node likelihoods based on the site, tree and any constraints. |
Uses of Likelihood.NodeLikelihood in Likelihood |
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Methods in Likelihood that return Likelihood.NodeLikelihood | |
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Likelihood.NodeLikelihood |
Likelihood.NodeLikelihood.clone()
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Likelihood.NodeLikelihood |
Likelihood.RateLikelihood.getNodeLikelihood(java.lang.String node)
Returns the likelihood results for a given node on the tree |
Constructor parameters in Likelihood with type arguments of type Likelihood.NodeLikelihood | |
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Calculator.SiteCalculator(Tree t,
Probabilities tp,
ArrayMap<java.lang.String,Likelihood.NodeLikelihood> nl)
Standard constructor |
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