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Packages that use Utils | |
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Alignments | Provides class for dealing with "alignments" and the sites in an alignment. |
Likelihood | Provides classes for calculating the likelihood of a tree given a model and an alignment. |
Models | Provides classes for defing a phylogenetic model. |
Utils | Provides various utility classes. |
Classes in Utils used by Alignments | |
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ArrayMap
A crude map of a fixed size that is backed by an array. |
Classes in Utils used by Likelihood | |
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ArrayMap
A crude map of a fixed size that is backed by an array. |
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Range
Used to represent a range (using doubkes) |
Classes in Utils used by Models | |
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ArrayMap
A crude map of a fixed size that is backed by an array. |
Classes in Utils used by Utils | |
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PossibleSettings
Maintains a list of possible settings. |
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SetSettings
Represents the value of settings. |
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SettingException
Exception thrown when there is a problem with the Settings machinery |
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SetUtils.SetHasMultipleElementsException
Exception thrown if an attempt is made to get the single element from a set that has multiple elements. |
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