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java.lang.ObjectLikelihood.Probabilities.RateProbabilities
public class Probabilities.RateProbabilities
Stores the values of each transition, frequency etc for one set of parameters and for a single rate category.
Method Summary | |
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SquareMatrix |
getP(Branch b)
Gets the probability matrix for a single branch |
double |
getP(Branch b,
java.lang.String startState,
java.lang.String endState)
Gets the probability fo a single transition on a single branch |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Method Detail |
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public SquareMatrix getP(Branch b)
b
- The branch to get the matrix for
public double getP(Branch b, java.lang.String startState, java.lang.String endState)
b
- The branchstartState
- The start stateendState
- The end state
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