|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use Models | |
---|---|
Ancestors | Provides classed to calculate ancestral reconstruction. |
Likelihood | Provides classes for calculating the likelihood of a tree given a model and an alignment. |
Models | Provides classes for defing a phylogenetic model. |
Optimizers | Provides classes for optimising a likelihood. |
Simulations | Provides a class to create simulate data. |
Classes in Models used by Ancestors | |
---|---|
Model
Represents an evolutionary model. |
|
Model.ModelException
Exception thrown when there is a problem with the model |
|
RateCategory.RateException
Exception thrown if there is a problem within a RateClass |
Classes in Models used by Likelihood | |
---|---|
Model
Represents an evolutionary model. |
|
Model.ModelException
Exception thrown when there is a problem with the model |
|
RateCategory
Represents a rate category of a phylogenetic model. |
|
RateCategory.RateException
Exception thrown if there is a problem within a RateClass |
Classes in Models used by Models | |
---|---|
Distributions.Calculation
Enumeration of the different methods of calculating a distribution |
|
Distributions.DistributionsException
Exception for use there is a problem calculating a distribution |
|
Model
Represents an evolutionary model. |
|
Model.ModelException
Exception thrown when there is a problem with the model |
|
RateCategory
Represents a rate category of a phylogenetic model. |
|
RateCategory.FrequencyType
Enumeration of the different ways of defining the root frequency |
|
RateCategory.RateException
Exception thrown if there is a problem within a RateClass |
Classes in Models used by Optimizers | |
---|---|
Model.ModelException
Exception thrown when there is a problem with the model |
|
RateCategory.RateException
Exception thrown if there is a problem within a RateClass |
Classes in Models used by Simulations | |
---|---|
Model
Represents an evolutionary model. |
|
Model.ModelException
Exception thrown when there is a problem with the model |
|
RateCategory.RateException
Exception thrown if there is a problem within a RateClass |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |