ivy on Mac

Rick Ree just gave an iEvoBio talk on his (very slick) Python-based interactive environment for phylogenetics called ivy.

I posted the virtualenv-created directory with my install for Mac (python 2.7, i386+x86_64 fat bundle). This might work for you if you do this:


wget http://phylo.bio.ku.edu/software/ivy.tar.bz
tar xfvj ivy.tar.bz
cd ivy
source ivydev/bin/activate
ipython -pylab

and then you should be able to see his user's guide at http://www.reelab.net/ivy/using.html for instructions on usage.

For reference, I created the bundle by:



mkdir ivy
cd ivy
virtualenv ivydev
. ivydev/bin/activate
pip install ivy-phylo
for module in matplotlib scipy numpy biopython pyparsing ipython lxml PIL ; do
    pip install --upgrade "$module" ;
done
cd ..
tar cfvj ivy.tar.bz ivy