- Pattern frequency demo
- Optimizing branch lengths using ML
- Comparing trees using ML requires branch length optimization
- Parsimony informative-pattern frequency demo
- Bootstrapping in phylogenetics
- Bootstrapping in parsimony-informative pattern frequency space demo
- How the P-value depends on the per-site likelihood difference distribution
Back to the demo table of contents...
Source code at https://github.com/mtholder/mephytis
Thanks to the U.S. National Science Foundation and the
Heidelberg Institute for Theoretical Studies for support.