NxsAssumptionsBlock Member List

This is the complete list of members for NxsAssumptionsBlock, including all inherited members.
ApplyExset(NxsString nm)NxsAssumptionsBlock
CharLabelToNumber(NxsString s) NCL_COULD_BE_CONSTNxsBlock [virtual]
CloneBlock(NxsBlockMapper &memo) const NxsBlock [virtual]
DemandEquals(NxsToken &token, const char *contextString) const NxsBlock [inline, protected]
DemandIsAtEquals(NxsToken &token, const char *contextString) const NxsBlock [protected]
DemandPositiveInt(NxsToken &token, const char *contextString) const NxsBlock [protected]
Disable()NxsBlock
Enable()NxsBlock
GenerateNxsException(NxsToken &token, const char *message=NULL) const NxsBlock [protected]
GenerateUnexpectedTokenNxsException(NxsToken &token, const char *expected=NULL) const NxsBlock [protected]
GetBlockIDCommandString() const NxsBlock [inline]
GetCharPartition(std::string nm) const NxsAssumptionsBlock
GetCharPartitionNames(vector< std::string > &names)NxsAssumptionsBlock
GetCharSet(NxsString nm) const NxsAssumptionsBlock
GetCharSetNames(NxsStringVector &names) const NxsAssumptionsBlock
GetDefExSetName()NxsAssumptionsBlock
GetExSet(NxsString nm)NxsAssumptionsBlock
GetExSetNames(NxsStringVector &names)NxsAssumptionsBlock
GetID() const NxsBlock
GetImpliedBlocks()NxsAssumptionsBlock [inline, virtual]
GetImpliedBlocksConst() const NxsBlock [virtual]
GetNexus() const NxsBlock [inline]
GetNumCharPartitions()NxsAssumptionsBlock
GetNumCharSets() const NxsAssumptionsBlock
GetNumExSets()NxsAssumptionsBlock
GetNumTaxSets()NxsAssumptionsBlock
GetTaxSet(NxsString nm)NxsAssumptionsBlock
GetTaxSetNames(NxsStringVector &names)NxsAssumptionsBlock
HandleBasicBlockCommands(NxsToken &token)NxsBlock [protected]
HandleBlockIDCommand(NxsToken &token)NxsBlock [virtual]
HandleCharPartition(NxsToken &token)NxsAssumptionsBlock [protected]
HandleCharSet(NxsToken &token)NxsAssumptionsBlock [protected]
HandleCodeSet(NxsToken &token)NxsAssumptionsBlock [protected]
HandleCodonPosSet(NxsToken &token)NxsAssumptionsBlock [protected]
HandleEndblock(NxsToken &token)NxsBlock [virtual]
HandleExSet(NxsToken &token)NxsAssumptionsBlock [protected]
HandleLinkCommand(NxsToken &)NxsAssumptionsBlock [virtual]
HandleTaxPartition(NxsToken &token)NxsAssumptionsBlock [protected]
HandleTaxSet(NxsToken &token)NxsAssumptionsBlock [protected]
HandleTitleCommand(NxsToken &token)NxsBlock [virtual]
HandleTreePartition(NxsToken &token)NxsAssumptionsBlock [protected]
HandleTreeSet(NxsToken &token)NxsAssumptionsBlock [protected]
HandleTypeSet(NxsToken &token)NxsAssumptionsBlock [protected]
HandleWeightSet(NxsToken &token)NxsAssumptionsBlock [protected]
ImplementsLinkAPI() const NxsBlock
IsEmpty() NCL_COULD_BE_CONSTNxsBlock
IsEnabled() NCL_COULD_BE_CONSTNxsBlock
IsUserSupplied() NCL_COULD_BE_CONSTNxsBlock
NxsAssumptionsBlock(NxsTaxaBlockAPI *t)NxsAssumptionsBlock
NxsBlock()NxsBlock
Read(NxsToken &token)NxsAssumptionsBlock [virtual]
ReadCharsetDef(NxsString charset_name, NxsToken &token, bool asterisked)NxsAssumptionsBlock [protected, virtual]
ReadExsetDef(NxsString charset_name, NxsToken &token, bool asterisked)NxsAssumptionsBlock [protected, virtual]
ReadTaxsetDef(NxsString set_name, NxsToken &token, bool asterisked)NxsAssumptionsBlock [protected, virtual]
ReadTreesetDef(NxsString set_name, NxsToken &token, bool asterisked)NxsAssumptionsBlock [protected, virtual]
ReplaceTaxaBlockPtr(NxsTaxaBlockAPI *tb)NxsAssumptionsBlock
Report(std::ostream &out) NCL_COULD_BE_CONSTNxsAssumptionsBlock [virtual]
Reset()NxsAssumptionsBlock [virtual]
SetCallback(NxsCharactersBlockAPI *p)NxsAssumptionsBlock
SetImplementsLinkAPI(bool v)NxsBlock
SetNexus(NxsReader *nxsptr)NxsBlock [inline, virtual]
SkippingCommand(NxsString commandName)NxsBlock [virtual]
TaxonLabelToNumber(NxsString s) const NxsAssumptionsBlock [protected, virtual]
WriteAsNexus(std::ostream &out) const NxsAssumptionsBlock [virtual]
WriteLinkCommand(std::ostream &out) const NxsAssumptionsBlock [virtual]
~NxsAssumptionsBlock()NxsAssumptionsBlock [virtual]
~NxsBlock()NxsBlock [virtual]
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