, including all inherited members.
ApplyExset(NxsString nm) | NxsAssumptionsBlock | |
CharLabelToNumber(NxsString s) NCL_COULD_BE_CONST | NxsBlock | [virtual] |
CloneBlock(NxsBlockMapper &memo) const | NxsBlock | [virtual] |
DemandEquals(NxsToken &token, const char *contextString) const | NxsBlock | [inline, protected] |
DemandIsAtEquals(NxsToken &token, const char *contextString) const | NxsBlock | [protected] |
DemandPositiveInt(NxsToken &token, const char *contextString) const | NxsBlock | [protected] |
Disable() | NxsBlock | |
Enable() | NxsBlock | |
GenerateNxsException(NxsToken &token, const char *message=NULL) const | NxsBlock | [protected] |
GenerateUnexpectedTokenNxsException(NxsToken &token, const char *expected=NULL) const | NxsBlock | [protected] |
GetBlockIDCommandString() const | NxsBlock | [inline] |
GetCharPartition(std::string nm) const | NxsAssumptionsBlock | |
GetCharPartitionNames(vector< std::string > &names) | NxsAssumptionsBlock | |
GetCharSet(NxsString nm) const | NxsAssumptionsBlock | |
GetCharSetNames(NxsStringVector &names) const | NxsAssumptionsBlock | |
GetDefExSetName() | NxsAssumptionsBlock | |
GetExSet(NxsString nm) | NxsAssumptionsBlock | |
GetExSetNames(NxsStringVector &names) | NxsAssumptionsBlock | |
GetID() const | NxsBlock | |
GetImpliedBlocks() | NxsAssumptionsBlock | [inline, virtual] |
GetImpliedBlocksConst() const | NxsBlock | [virtual] |
GetNexus() const | NxsBlock | [inline] |
GetNumCharPartitions() | NxsAssumptionsBlock | |
GetNumCharSets() const | NxsAssumptionsBlock | |
GetNumExSets() | NxsAssumptionsBlock | |
GetNumTaxSets() | NxsAssumptionsBlock | |
GetTaxSet(NxsString nm) | NxsAssumptionsBlock | |
GetTaxSetNames(NxsStringVector &names) | NxsAssumptionsBlock | |
HandleBasicBlockCommands(NxsToken &token) | NxsBlock | [protected] |
HandleBlockIDCommand(NxsToken &token) | NxsBlock | [virtual] |
HandleCharPartition(NxsToken &token) | NxsAssumptionsBlock | [protected] |
HandleCharSet(NxsToken &token) | NxsAssumptionsBlock | [protected] |
HandleCodeSet(NxsToken &token) | NxsAssumptionsBlock | [protected] |
HandleCodonPosSet(NxsToken &token) | NxsAssumptionsBlock | [protected] |
HandleEndblock(NxsToken &token) | NxsBlock | [virtual] |
HandleExSet(NxsToken &token) | NxsAssumptionsBlock | [protected] |
HandleLinkCommand(NxsToken &) | NxsAssumptionsBlock | [virtual] |
HandleTaxPartition(NxsToken &token) | NxsAssumptionsBlock | [protected] |
HandleTaxSet(NxsToken &token) | NxsAssumptionsBlock | [protected] |
HandleTitleCommand(NxsToken &token) | NxsBlock | [virtual] |
HandleTreePartition(NxsToken &token) | NxsAssumptionsBlock | [protected] |
HandleTreeSet(NxsToken &token) | NxsAssumptionsBlock | [protected] |
HandleTypeSet(NxsToken &token) | NxsAssumptionsBlock | [protected] |
HandleWeightSet(NxsToken &token) | NxsAssumptionsBlock | [protected] |
ImplementsLinkAPI() const | NxsBlock | |
IsEmpty() NCL_COULD_BE_CONST | NxsBlock | |
IsEnabled() NCL_COULD_BE_CONST | NxsBlock | |
IsUserSupplied() NCL_COULD_BE_CONST | NxsBlock | |
NxsAssumptionsBlock(NxsTaxaBlockAPI *t) | NxsAssumptionsBlock | |
NxsBlock() | NxsBlock | |
Read(NxsToken &token) | NxsAssumptionsBlock | [virtual] |
ReadCharsetDef(NxsString charset_name, NxsToken &token, bool asterisked) | NxsAssumptionsBlock | [protected, virtual] |
ReadExsetDef(NxsString charset_name, NxsToken &token, bool asterisked) | NxsAssumptionsBlock | [protected, virtual] |
ReadTaxsetDef(NxsString set_name, NxsToken &token, bool asterisked) | NxsAssumptionsBlock | [protected, virtual] |
ReadTreesetDef(NxsString set_name, NxsToken &token, bool asterisked) | NxsAssumptionsBlock | [protected, virtual] |
ReplaceTaxaBlockPtr(NxsTaxaBlockAPI *tb) | NxsAssumptionsBlock | |
Report(std::ostream &out) NCL_COULD_BE_CONST | NxsAssumptionsBlock | [virtual] |
Reset() | NxsAssumptionsBlock | [virtual] |
SetCallback(NxsCharactersBlockAPI *p) | NxsAssumptionsBlock | |
SetImplementsLinkAPI(bool v) | NxsBlock | |
SetNexus(NxsReader *nxsptr) | NxsBlock | [inline, virtual] |
SkippingCommand(NxsString commandName) | NxsBlock | [virtual] |
TaxonLabelToNumber(NxsString s) const | NxsAssumptionsBlock | [protected, virtual] |
WriteAsNexus(std::ostream &out) const | NxsAssumptionsBlock | [virtual] |
WriteLinkCommand(std::ostream &out) const | NxsAssumptionsBlock | [virtual] |
~NxsAssumptionsBlock() | NxsAssumptionsBlock | [virtual] |
~NxsBlock() | NxsBlock | [virtual] |