NxsTaxaBlock Member List

This is the complete list of members for NxsTaxaBlock, including all inherited members.
ActivateTaxa(const std::set< unsigned > &)NxsTaxaBlock [inline, virtual]
ActivateTaxon(unsigned)NxsTaxaBlock [inline, virtual]
AddTaxonLabel(const std::string &s)NxsTaxaBlock [virtual]
CapitalizedTaxLabelToNumber(const std::string &s) const NxsTaxaBlock [inline, protected]
ChangeTaxonLabel(unsigned i, NxsString s)NxsTaxaBlock [virtual]
CharLabelToNumber(NxsString s) NCL_COULD_BE_CONSTNxsBlock [virtual]
CheckCapitalizedTaxonLabel(const std::string &s) const NxsTaxaBlock [protected]
CloneBlock(NxsBlockMapper &memo) const NxsBlock [virtual]
DemandEquals(NxsToken &token, const char *contextString) const NxsBlock [inline, protected]
DemandIsAtEquals(NxsToken &token, const char *contextString) const NxsBlock [protected]
DemandPositiveInt(NxsToken &token, const char *contextString) const NxsBlock [protected]
Disable()NxsBlock
Enable()NxsBlock
FindTaxon(const NxsString &label) const NxsTaxaBlock [virtual]
GenerateNxsException(NxsToken &token, const char *message=NULL) const NxsBlock [protected]
GenerateUnexpectedTokenNxsException(NxsToken &token, const char *expected=NULL) const NxsBlock [protected]
GetAllLabels() const NxsTaxaBlockAPI [virtual]
GetBlockIDCommandString() const NxsBlock [inline]
GetID() const NxsBlock
GetImpliedBlocks()NxsBlock [virtual]
GetImpliedBlocksConst() const NxsBlock [virtual]
GetIndicesForLabel(const std::string &label, NxsUnsignedSet *inds) const NxsTaxaBlock [virtual]
GetIndicesFromSetOrAsNumber(const std::string &label, NxsUnsignedSet *inds, const NxsUnsignedSetMap &itemSets, const unsigned maxInd, const char *itemType)NxsLabelToIndicesMapper [protected, static]
GetIndicesFromSets(const std::string &label, NxsUnsignedSet *inds, const NxsUnsignedSetMap &itemSets)NxsLabelToIndicesMapper [protected, static]
GetMaxIndex() const NxsTaxaBlock [virtual]
GetMaxTaxonLabelLength()NxsTaxaBlock [virtual]
GetNexus() const NxsBlock [inline]
GetNTax() const NxsTaxaBlock [inline, virtual]
GetNTaxTotal() const NxsTaxaBlock [inline, virtual]
GetNumActiveTaxa() const NxsTaxaBlock [inline, virtual]
GetNumTaxonLabels() const NxsTaxaBlock [virtual]
GetTaxonLabel(unsigned i) const NxsTaxaBlock [virtual]
HandleBasicBlockCommands(NxsToken &token)NxsBlock [protected]
HandleBlockIDCommand(NxsToken &token)NxsBlock [virtual]
HandleEndblock(NxsToken &token)NxsBlock [virtual]
HandleLinkCommand(NxsToken &token)NxsBlock [virtual]
HandleTaxLabels(NxsToken &token)NxsTaxaBlock [virtual]
HandleTitleCommand(NxsToken &token)NxsBlock [virtual]
ImplementsLinkAPI() const NxsBlock
InactivateTaxa(const std::set< unsigned > &)NxsTaxaBlock [inline, virtual]
InactivateTaxon(unsigned)NxsTaxaBlock [inline, virtual]
IsActiveTaxon(unsigned i) const NxsTaxaBlock [inline, virtual]
IsAlreadyDefined(const std::string &label)NxsTaxaBlock [virtual]
IsEmpty() NCL_COULD_BE_CONSTNxsBlock
IsEnabled() NCL_COULD_BE_CONSTNxsBlock
IsUserSupplied() NCL_COULD_BE_CONSTNxsBlock
NeedsQuotes(unsigned i)NxsTaxaBlock
NxsBlock()NxsBlock
Read(NxsToken &token)NxsTaxaBlock [protected, virtual]
Report(std::ostream &out) NCL_COULD_BE_CONSTNxsTaxaBlock [virtual]
Reset()NxsTaxaBlock [virtual]
SetImplementsLinkAPI(bool v)NxsBlock
SetNexus(NxsReader *nxsptr)NxsBlock [inline, virtual]
SetNtax(unsigned n)NxsTaxaBlock [virtual]
SkippingCommand(NxsString commandName)NxsBlock [virtual]
TaxLabelToNumber(const std::string &label) const NxsTaxaBlock [virtual]
TaxonLabelToNumber(NxsString s) const NxsBlock [virtual]
WriteAsNexus(std::ostream &out) const NxsTaxaBlock [virtual]
WriteLinkCommand(std::ostream &out) const NxsBlock [virtual]
WriteTaxLabelsCommand(std::ostream &out) const NxsTaxaBlock [virtual]
~NxsBlock()NxsBlock [virtual]
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