NxsTaxaBlockAPI Class Reference

This abstract class describes the interface that every block that wants to serve as a reader of NEXUS TAXA blocks should fulfill. More...

Public Member Functions
virtual unsigned	AddTaxonLabel (const std::string &s)=0
virtual void	ChangeTaxonLabel (unsigned i, NxsString s)=0
virtual unsigned	FindTaxon (const NxsString &label) const =0
virtual bool	IsAlreadyDefined (const std::string &label)=0
virtual unsigned	GetMaxTaxonLabelLength ()=0
virtual unsigned	GetNumTaxonLabels () const =0
virtual unsigned	GetNTax () const =0
virtual unsigned	GetNTaxTotal () const =0
virtual NxsString	GetTaxonLabel (unsigned i) const =0
virtual std::vector< std::string >	GetAllLabels () const
virtual unsigned	TaxLabelToNumber (const std::string &label) const =0
virtual void	HandleTaxLabels (NxsToken &token)=0
virtual void	WriteTaxLabelsCommand (std::ostream &out) const =0
virtual void	SetNtax (unsigned n)=0
virtual unsigned	GetNumActiveTaxa () const =0
virtual bool	IsActiveTaxon (unsigned i) const =0
virtual unsigned	InactivateTaxa (const std::set< unsigned > &s)=0
virtual unsigned	ActivateTaxa (const std::set< unsigned > &)=0
virtual unsigned	InactivateTaxon (unsigned)=0
virtual unsigned	ActivateTaxon (unsigned)=0

Detailed Description

This abstract class describes the interface that every block that wants to serve as a reader of NEXUS TAXA blocks should fulfill.

A parsed taxa block in NEXUS is essentially a list of unique taxon labels.

When compared the label comparison is not case-sensitive.

The taxon can be referred to in NEXUS files by its number (numbering starting at 1), or its label.

Definition at line 34 of file nxstaxablock.h.

The documentation for this class was generated from the following files: