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Ayres DL, Darling A, Zwickl DJ, Beerli P, Holder MT, Lewis PO, Huelsenbeck JP, Ronquist F, Swofford DL, Cummings MP et al..  2012.  BEAGLE: an Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics. Systematic Biology. 61(1):170-173.
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Allman ES, Holder MT, Rhodes JA.  2010.  Estimating trees from filtered data: Identifiability of models for morphological phylogenetics. Journal of Theoretical Biology. 263(1):108-119.
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Alfaro ME, Holder MT.  2006.  The Posterior and the Prior in Bayesian Phylogenetics. Annual Review of Ecology, Evolution, and Systematics. 37:19-42.
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The Holder Lab is part of the Department of Ecology and Evolutionary Biology at KU