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Journal Article
Lapp H, Bala S, Balhoff JP, Bouck A, Goto N, Holder MT, Holland R, Holloway A, Katayama T, Lewis PO et al..  2007.  The 2006 NESCent Phyloinformatics Hackathon: A Field Report. Evolutionary Bioinformatics. 3:357–366.
Grismer LL, Neang T, Chav T, Perry L. Wood J, Oaks JR, Holden J, Grismer JL, Szutz TR, Youmans TM.  2008.  Additional amphibians and reptiles from the Phnom Samkos Wildlife Sanctuary in Northwestern Cardamom Mountains, Cambodia, with comments on their taxonomy and the discovery of four new species. Raffles Bulletin of Zoology. 56:161-175.
Kichler KL, Holder MT, Davis SK, Marquez R, Owens D.  1999.  Detection of multiple paternity in the Kemp's ridley sea turtle with limited sampling. Molecular Ecology. 8:819-830.
Oaks JR, Daul JM, Adler GH.  2008.  Life span of a tropical forest rodent, \emphProechimys semispinosus}. Journal of Mammology. 89:904-908.
Evans NM, Holder MT, Barbeitos MS, Okamura B, Cartwright P.  2010.  The Phylogenetic Position of Myxozoa: Exploring Conflicting Signals in Phylogenomic and Ribosomal Data Sets. Molecular Biology and Evolution. 27:2733–2746.
Siler CD, Oaks JR, Esselstyn JA, Diesmos AC, Brown RM.  2010.  Phylogeny and biogeography of Philippine bent-toed geckos (Gekkonidae: Cyrtodactylus) contradict a prevailing model of Pleistocene diversification. Molecular Phylogenetics and Evolution. ::inpress.
Edgcomb V, Orsi W, Bunge J, Jeon SO, Christen R, Leslin C, Holder M, Taylor GT, Suarez P, Varela R et al..  2011.  Protistan Microbial Observatory in the Cariaco Basin, Caribbean. I. Species richness and endemicity. ISME Journal. 5(8):1344-1356.