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Book Chapter
Holder KK, Holder MT.  2007.  Phylogeography and Population Genetics. Biology and Conservation of {R}idley Sea Turtles. :107–118.
Holder MT, Sukumaran J, Brown RM.  2010.  Recent Developments in Bayesian Phylogenetics. Bayesian Modeling in Bioinformatics. :inpress.
Journal Article
Alfaro ME, Holder MT.  2006.  The Posterior and the Prior in Bayesian Phylogenetics. Annual Review of Ecology, Evolution, and Systematics. 37:19-42.
Holder MT, Erdmann MV, Wilcox TP, Caldwell RL, Hillis DM.  1999.  Two living species of coelacanths? Proceedings of the National Academy of Sciences. 96:12616-12620.