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Zwickl DJ, Hillis DM.  2002.  Increased taxon sampling greatly reduces phylogenetic error. SYSTEMATIC BIOLOGY. 51:588-598. Abstract
Zakon HH, Zwickl DJ, Lu Y, Hillis DM.  2008.  Molecular evolution of communication signals in electric fish. JOURNAL OF EXPERIMENTAL BIOLOGY. 211:1814-1818. Abstract
Zakon HH, Lu Y, Zwickl DJ, Hillis DM.  2006.  Sodium channel genes and the evolution of diversity in communication signals of electric fishes: Convergent molecular evolution. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 103:3675-3680. Abstract
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Wilcox TP, Zwickl DJ, Heath TA, Hillis DM.  2002.  Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support. Molecular Phylogenetics and Evolution. 25:361-71.
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Pollock DD, Zwickl DJ, McGuire JA, Hillis DM.  2002.  Increased taxon sampling is advantageous for phylogenetic inference. SYSTEMATIC BIOLOGY. 51:664-671.
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Holder MT, Erdmann MV, Wilcox TP, Caldwell RL, Hillis DM.  1999.  Two living species of coelacanths? Proceedings of the National Academy of Sciences. 96:12616-12620.
Hillis DM, Holder MT.  2000.  Reconstructing the Tree of Life. New Technologies for the Life Sciences: A Trends Guide. Supplement to Trends Journals. :47-50.
Hillis DM, Pollock DD, McGuire JA, Zwickl DJ.  2003.  Is sparse taxon sampling a problem for phylogenetic inference? SYSTEMATIC BIOLOGY. 52:124-126.
Hillis DM, Heath TA, StJohn K.  2005.  Analysis and Visualization of Tree Space. Systematic Biology. 54:471-482.
Heath TA, Zwickl DJ, Kim J, Hillis DM.  2008.  Taxon sampling affects inferences of macroevolutionary processes from phylogenetic trees. Systematic Biology. 57:160-166.
Heath TA, Hedtke SM, Hillis DM.  2008.  Taxon sampling and the accuracy of phylogenetic analyses. Journal of Systematics and Evolution. 46:239-257.
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Brauer MJ, Holder MT, Dries LA, Zwickl DJ, Lewis PO, Hillis DM.  2002.  Genetic Algorithms and Parallel Processing in Maximum-Likelihood Phylogeny Inference. Molecular Biology and Evolution. 19:1717-1726.