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Gelfand AE, Silander, Jr. JA, Wu S-shan, Latimer AM, Lewis PO, Rebelo AG, Holder MT. 2006. Explaining Species Distribution Patterns through Hierarchical Modeling. {B}ayesian Analysis. 1:41-92.

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Wiens J, Sukumaran J, Pyron A, Brown RM. 2009. Evolutionary and biogeographic origins of high tropical diversity in Old World frogs (Ranidae). Evolution. 63:1217–1231.

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Holder MT, Zwickl DJ, Dessimoz C. 2008. Evaluating the Robustness of Phylogenetic Methods to Among-Site Variability in Substitution Processes. Philosophical Transactions of the Royal Society B: Biological Sciences. 363:4013-4012.

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Allman ES, Holder MT, Rhodes JA. 2010. Estimating trees from filtered data: Identifiability of models for morphological phylogenetics. Journal of Theoretical Biology. 263(1):108-119.

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Holder MT, Steel M. 2011. Estimating phylogenetic trees from pairwise likelihoods and posterior probabilities of substitution counts. Journal of Theoretical Biology. 280(1):159-166.

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