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Liu K, Warnow TJ, Holder MT, Nelesen S, Yu J, Stamatakis A, Linder RC.  2012.  SATé-II: Very Fast and Accurate Simultaneous Estimation of Multiple Sequence Alignments and Phylogenetic Trees. Systematic Biology. 61(1):90-106.
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Zakon HH, Lu Y, Zwickl DJ, Hillis DM.  2006.  Sodium channel genes and the evolution of diversity in communication signals of electric fishes: Convergent molecular evolution. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 103:3675-3680. Abstract
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Hillis DM, Pollock DD, McGuire JA, Zwickl DJ.  2003.  Is sparse taxon sampling a problem for phylogenetic inference? SYSTEMATIC BIOLOGY. 52:124-126.
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Sukumaran J, Das I, Haas A.  2006.  A synopsis of bioacoustic studies of Anuran amphibians of Borneo. Herpetological Review. 37:288–293.
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The Holder Lab is part of the Department of Ecology and Evolutionary Biology at KU