Fall 2011 Systematics Discussion

Contact Paulyn Cartwright for info on the Spring 2012 Topics in Phyloinformatics course.

Systematics Discussion Fall 2011

Meeting: Tue 2:45-3:30 pm in 8024 Haworth

Date Disc. Leader Paper
Aug. 30 Rafe Brown Rich Glor. 2010. "Phylogenetic Insights on Adaptive Radiation." Ann. Rev. Ecol. Evol. Syst.
41:251-270. http://www.annualreviews.org/doi/pdf/10.1146/annurev.ecolsys.39.110707.173447
Sep. 06 Jenny Archibald Yeates et al. 2011. "Integrative taxonomy, or iterative taxonomy?" Systematic Entomology
36:209–217. http://onlinelibrary.wiley.com/doi/10.1111/j.1365-3113.2010.00558.x/full
Padial & De la Riva 2010. "A response to recent proposals for integrative taxonomy." Biological Journal of the Linnean Society
101:747–756. http://onlinelibrary.wiley.com/doi/10.1111/j.1095-8312.2010.01528.x/abstract
Sep. 13 Mark Holder J. B. Losos, “Convergence, Adaptation, and Constraint,” Evolution. 65(7) 1827-1840. pdf.
Sep. 20 Anthony Barley Near, T.J. et. al. 2011. Phylogeny and Temporal Diversification of Darters (Percidae: Etheostomatinae). Systematic Biology. 60(5): 565-595. http://sysbio.oxfordjournals.org/content/60/5/565.
Sep 27 Charles Linkem Wiens, J.J. 2011. The Causes Of Species Richness Patterns Across Space, Time, And Clades And The Role Of “Ecological Limits”. The Quarterly Review of Biology. 86(2): 75-96. http://www.jstor.org/stable/10.1086/659883.

Rabosky, D.L. 2009. Ecological limits and diversification rate: alternative paradigms to explain the variation in species richness among clades and regions. Ecology Letters. 12(8): 735-743. http://onlinelibrary.wiley.com/doi/10.1111/j.1461-0248.2009.01333.x/pdf.

Oct. 04 Steve Sanders Losos, J.B. 2011. Seeing the Forest for the Trees: The Limitations of Phylogenies in Comparative Biology. The American Naturalist. 177(6): 709-727. http://www.jstor.org/stable/10.1086/660020.
Oct. 11 Fall Break
Oct. 18 Taro Eldredge Blomberg, S.P. & Garland Jr, T. 2002. Tempo and mode in evolution: phylogenetic inertia, adaptation and comparative methods. Journal of Evolutionary Biology. 15(6): 899-910. http://onlinelibrary.wiley.com/doi/10.1046/j.1420-9101.2002.00472.x/pdf.

Winger, B.M., Lovette, I.J., & Winkler, D.W. 2011. Ancestry and evolution of seasonal migration in the Parulidae. Proceedings of the Royal Society B. http://rspb.royalsocietypublishing.org/content/early/2011/07/08/rspb.2011.1045.full.

Oct. 25 Allison Fuiten Ronquist, F. & Sanmartín, I. 2011. Phylogenetic Methods in Biogeography. Annual Review of Ecology, Evolution, and Systematics. http://www.annualreviews.org/doi/abs/10.1146/annurev-ecolsys-102209-144710.
Nov. 1 Crystal Maier Cho et al. 2011. Can Deliberately Incomplete Gene Sample Augmentation Improve a Phylogeny Estimate for the Advanced Moths and Butterflies (Hexapoda: Lepidoptera)?. Systematic Biology. 60(6): 782-796. http://sysbio.oxfordjournals.org/content/early/2011/08/11/sysbio.syr079.full.pdf+html.
Nov. 08 Sally Chang Smith, S.A. et al. 2011. Resolving the evolutionary relationships of molluscs with phylogenomic tools. Nature. http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10526.html. Kocot, K.M. et al. 2011. Phylogenomics reveals deep molluscan relationships. Nature. 477(7365):452-456. http://www.nature.com/nature/journal/v477/n7365/full/nature10382.html.
Nov. 15 Andrea Crowther Park et al. (2011) "Estimation of divergence times in cnidarian evolution based on mitochondrial protein-coding genes and the fossil record." Molecular Phylogenetics and Evolution. http://www.sciencedirect.com/science/article/pii/S1055790311004374.
doi:10.1016/j.ympev.2011.10.008
Nov. 22 Paulyn Cartwright Jondelius, U. et al. 2011. How the Worm Got its Pharynx: Phylogeny, Classification and Bayesian Assessment of Character Evolution in Acoela. Systematic Biology. 60(6): 845-871. http://sysbio.oxfordjournals.org/content/60/6/845.full.pdf+html.
Nov. 29 Annalise Nawrocki Janies et al. 2011. Echinoderm Phylogeny Including Xyloplax, a Progenetic Asteroid Systematic Biology. 60(4):420–438. http://sysbio.oxfordjournals.org/content/60/4/420.full. Pisani et al. Resolving phylogenetic signal from noise when divergence is rapid: A new look at the old problem of echinoderm class relationships. Molecular Phylogenetics and Evolution. (in press) http://www.sciencedirect.com/science/article/pii/S1055790311003873.
Dec. 06 Bastian Bentlage Fine PVA & Kembel Wet al. 2011. Phylogenetic community structure and phylogenetic turnover across space and edaphic gradients in western Amazonian tree communities Ecography. 34552-565. http://onlinelibrary.wiley.com/doi/10.1111/j.1600-0587.2010.06548.x/abst...

Spring 2011 page at http://phylo.bio.ku.edu/content/spring-2011-systematics-discussion-group...

Fall 2010 page at http://phylo.bio.ku.edu/content/fall-2010-systematics-discussion-group-s...