NxsCharactersBlock * NxsCharactersBlock::NewProteinCharactersBlock ( const NxsCharactersBlock codonBlock,
bool  mapPartialAmbigToUnknown,
bool  gapToUnknown,
const std::vector< NxsDiscreteStateCell > &  aaIndices 
) [static]

the index of the amino acid symbols for the codon (where the order of codons is alphabetical: AAA, AAC, AAG, AAT, ACA, ...TTT

Definition at line 1129 of file nxscharactersblock.cpp.

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