NxsReader

Add AddBlockToUsedBlockList AddFactory AddReadBlock AMBIGUOUS_CONTENT_WARNING AssignBlockPriority BlockIsASingeltonReader BlockListEmpty BlockReadHook ClearContent ClearUsedBlockList CoreExecutionTasks CreateBlockFromFactories cullIdenticalTaxaBlocks DebugReportBlock DeleteBlocksFromFactories DemoteBlocks DEPRECATED_WARNING Detach EnteringBlock Execute ExecuteBlock ExecuteStarting ExecuteStopping ExitingBlock FATAL_WARNING FindBlockByTitle FindBlockOfTypeByTitle GetAllTitlesForBlock GetBlockPriority GetBlocksFromLastExecuteInOrder GetCharBlockByTitle GetLastStoredBlockByID GetLastStoredCharactersBlock GetLastStoredTaxaBlock GetLastStoredTreesBlock getNCLCatchesSignals getNumSignalIntsCaught GetOriginalTaxaBlock GetSetOfAllUsedBlocks GetTaxaBlockByTitle GetTaxaBlockFactory GetTreesBlockByTitle GetUsedBlocks GetUsedBlocksInOrder IGNORE_WARNINGS ILLEGAL_CONTENT_WARNING IsRepeatedTaxaBlock NCLCopyrightNotice NCLHomePageURL NCLNameAndVersion NewBlockTitleCheckHook NexusError NexusWarn NexusWarnToken NexusWarnToken NxsReader NxsWarnLevel OutputComment OVERWRITING_CONTENT_WARNING parseFileWithReader PositionInBlockList PostBlockReadingHook PROBABLY_INCORRECT_CONTENT_WARNING ReadFilepath ReadFilestream ReadStringAsNexusContent ReadUntilEndblock Reassign RegisterAltTitle RemoveBlockFromUsedBlockList RemoveBlocksFromFactoriesFromUsedBlockLists RemoveFactory SetAlwaysReportStatusMessages setNCLCatchesSignals setNumSignalsIntsCaught SetTaxaBlockFactory SetWarningOutputLevel SKIPPING_CONTENT_WARNING SkippingBlock SkippingDisabledBlock statusMessage SUPPRESS_WARNINGS_LEVEL UNCOMMON_SYNTAX_WARNING WarningHandlingMode WARNINGS_ARE_ERRORS WARNINGS_TO_STDERR WARNINGS_TO_STDOUT

void NxsReader::OutputComment ( const NxsString &  comment  )  [virtual] This function may be used to report progess while reading through a file. For example, the NxsAllelesBlock class uses this function to report the name of the population it is currently reading so the user doesn't think the program has hung on large data sets. Definition at line 1042 of file nxsreader.cpp.