Slide links

Joe put up a web site http://evolution.gs.washington.edu/sisg/2014/ with links to the slides.

Mark's Intro slides

Mark's Searching slides

PAUP for SISG

The download site for test versions of PAUP is http://people.sc.fsu.edu/~dswofford/paup_test

All versions are developmental (not stable). They are expiring versions which are for use by SISG 2014 students only (we do not have permission to redistribute these copies of PAUP to people who are not in the phylogenetics module of SISG 2013).

PAUP demo for Windows

Note: On some versions of Windows, you must run the PAUP executable by right-clicking the icon for PAUP and choosing the "Run As Administrator" from the drop-down menu.

PAUP demo

other links:

PAUP website

FigTree (an alternative to TreeView).

MrBayes

Tracer

Paup and MB labs


Datasets

Day One (Short) PAUP lab

angio35b.nex

fzone_sim.nex

567Tx2153C.nex


Datafiles for the in depth PAUP lab

algae.nex

primates-mtDNA.nex


Day 2 MrBayes Lab files

algaemb.nex

jc.nex

bglobin.nex