Alignments

Class UniqueSite

java.lang.Object

Alignments.Site

Alignments.UniqueSite

All Implemented Interfaces:

java.io.Serializable

public class UniqueSite
extends Site

Used to represent a unique site in an alignment. Augments the normal site class with a count of how often the site occurs.

Version:

2.0

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
UniqueSite(Site s, int c) Default constructor

Method Summary

Methods

Modifier and Type	Method and Description
int	getCount() Get the number of times the site occurs in the related alignment
java.lang.String	toString()

Methods inherited from class Alignments.Site

equals, getAmbiguous, getCharacter, getID, getInitialNodeLikelihoods, getNum, getRawCharacter, getSiteClass, getTaxa, hashCode, limitToTaxa, recode, recode

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

UniqueSite

public UniqueSite(Site s,
          int c)

Default constructor

Parameters:

s - The site

c - How often the site occurs

Method Detail

getCount

public int getCount()

Get the number of times the site occurs in the related alignment

Returns:

The number of times the site occurs

toString

public java.lang.String toString()

Overrides:

toString in class Site