| Package | Description |
|---|---|
| Ancestors |
Provides classed to calculate ancestral reconstruction.
|
| Modifier and Type | Method and Description |
|---|---|
abstract Alignment |
AncestralJoint.calculate(Parameters params)
Calculates the reconstruction
|
Alignment |
AncestralJointBB.calculate(Parameters p) |
Alignment |
AncestralJointDP.calculate(Parameters params) |
Real |
AncestralMarginal.SiteResult.getProbability(java.lang.String node,
java.lang.String state)
Gets thr probability of a given state at a given node
|
AncestralMarginal.SiteResult |
AncestralMarginal.Result.getSiteResult(Site s)
Gets the site results for a given site
|