Uses of Class
Ancestors.AncestralJoint

Packages that use AncestralJoint

Package	Description
Ancestors	Provides classed to calculate ancestral reconstruction.

Uses of AncestralJoint in Ancestors

Subclasses of AncestralJoint in Ancestors

Modifier and Type	Class and Description
class	AncestralJointBB Class to perform joint ancestral reconstrion using the method of Pupko 2002 slightly modified
class	AncestralJointDP Class to perform joint ancestral reconstruction using the method of Pupko 2000

Methods in Ancestors that return AncestralJoint

Modifier and Type	Method and Description
static AncestralJoint	AncestralJoint.newInstance(java.util.Map<java.lang.String,Model> m, Alignment a, java.util.Map<java.lang.String,Tree> t) Returns an object of this class that can be used for joint reconstruction.
static AncestralJoint	AncestralJoint.newInstance(java.util.Map<java.lang.String,Model> m, Alignment a, Tree t) Returns an object of this class that can be used for joint reconstruction.
static AncestralJoint	AncestralJoint.newInstance(Model m, Alignment a, java.util.Map<java.lang.String,Tree> t) Returns an object of this class that can be used for joint reconstruction.
static AncestralJoint	AncestralJoint.newInstance(Model m, Alignment a, Tree t) Returns an object of this class that can be used for joint reconstruction.