Package | Description |
---|---|
Ancestors |
Provides classed to calculate ancestral reconstruction.
|
Likelihood |
Provides classes for calculating the likelihood of a tree given a model and
an alignment.
|
Maths |
Provides maths classes.
|
Modifier and Type | Method and Description |
---|---|
static void |
AncestralJointDP.realType(RealFactory.RealType type)
Sets the real type to be used during calculations, either
SmallDouble
or StandardDouble |
Modifier and Type | Method and Description |
---|---|
static void |
SiteLikelihood.realType(RealFactory.RealType type)
Sets the real type to be used during calculations, either
SmallDouble
or StandardDouble . |
Modifier and Type | Method and Description |
---|---|
static RealFactory.RealType |
RealFactory.RealType.valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.
|
static RealFactory.RealType[] |
RealFactory.RealType.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
Modifier and Type | Method and Description |
---|---|
static Real |
RealFactory.getReal(RealFactory.RealType type,
double d)
Returns a new real of the given type and value
|
static Real |
RealFactory.getSmallestReal(RealFactory.RealType type)
Returns the smallest possible real of the given type
|