Uses of Package
Optimizers

Packages that use Optimizers

Package	Description
Likelihood	Provides classes for calculating the likelihood of a tree given a model and an alignment.
ModelTest
Optimizers	Provides classes for optimising a likelihood.

Classes in Optimizers used by Likelihood

Class and Description
Optimizable Interface for classes that represent optimisable likelihood functions.

Classes in Optimizers used by ModelTest

Class and Description
Optimizer Interface for different likelihood optimisers

Classes in Optimizers used by Optimizers

Class and Description
ConjugateGradient.ProgressLevel Enumeration of the different levels of output
ConjugateGradient.Update Enumeration of the different update methods
GoldenSection.ProgressLevel Enumeration of the different levels of output
NelderMead.DebugLevel Enumeration of the debug level
Optimizable Interface for classes that represent optimisable likelihood functions.
Optimizer Interface for different likelihood optimisers
Optimizer.OptimizerException Exception for when there is a problem with an optimiser.