Uses of Class
Simulations.Simulate.SimulationException

Packages that use Simulate.SimulationException

Package	Description
Simulations	Provides a class to create simulated data.

Uses of Simulate.SimulationException in Simulations

Methods in Simulations that throw Simulate.SimulationException

Modifier and Type	Method and Description
Alignment	Simulate.getAlignment(int length) Gets a simulated alignment, not returning the state of internal nodes
Alignment	Simulate.getAlignment(int length, boolean internal) Gets a simulated alignment
Alignment	Simulate.getAlignment(int length, boolean internal, java.util.Map<java.lang.String,java.lang.String> recode) Gets a simulated alignment.
Alignment	Simulate.getAlignment(int length, java.util.Map<java.lang.String,java.lang.String> recode) Gets a simulated alignment, not returning the state of internal nodes.
Alignment	Simulate.getAlignment(java.util.List<java.lang.String> siteClasses) Gets a simulated alignment, not returning the state of the internal nodes.
Alignment	Simulate.getAlignment(java.util.List<java.lang.String> siteClasses, boolean internal) Gets a simulated alignment.
Alignment	Simulate.getAlignment(java.util.List<java.lang.String> siteClasses, boolean internal, java.util.Map<java.lang.String,java.lang.String> recode) Gets a simulated alignment.
Alignment	Simulate.getAlignment(java.util.List<java.lang.String> siteClasses, java.util.Map<java.lang.String,java.lang.String> recode) Gets a simulated alignment, not returning the state of the internal nodes.
Site	Simulate.getSite() Gets a simulated site without returning the state of the internal nodes
Site	Simulate.getSite(boolean internal) Gets a simulated site
Site	Simulate.getSite(boolean internal, java.util.Map<java.lang.String,java.lang.String> recode) Gets a simulated site.
Site	Simulate.getSite(boolean internal, java.util.Map<java.lang.String,java.lang.String> recode, java.lang.String siteClass) Gets a simulated site.
Site	Simulate.getSite(boolean internal, java.lang.String siteClass) Gets a simulated site
Site	Simulate.getSite(java.util.Map<java.lang.String,java.lang.String> recode) Gets a simulated site without returning the state of the internal nodes.
Site	Simulate.getSite(java.util.Map<java.lang.String,java.lang.String> recode, java.lang.String siteClass) Gets a simulated site without returning the state of the internal nodes.
Site	Simulate.getSite(java.lang.String siteClass) Gets a simulated site without returning the state of the internal nodes