Package | Description |
---|---|
Likelihood |
Provides classes for calculating the likelihood of a tree given a model and
an alignment.
|
Utils |
Provides various utility classes.
|
Class and Description |
---|
Range
Used to represent a range (using doubles)
|
Class and Description |
---|
PossibleSettings
Maintains a list of possible settings.
|
SetSettings
Represents the value of settings.
|
SettingException
Exception thrown when there is a problem with the Settings machinery
|
SetUtils.SetHasMultipleElementsException
Exception thrown if an attempt is made to get the single element from
a set that has multiple elements.
|