NxsTaxaBlock Member List

This is the complete list of members for NxsTaxaBlock, including all inherited members.

ActivateTaxa(const std::set< unsigned > &)	NxsTaxaBlock	[inline, virtual]
ActivateTaxon(unsigned)	NxsTaxaBlock	[inline, virtual]
AddTaxonLabel(const std::string &s)	NxsTaxaBlock	[virtual]
CapitalizedTaxLabelToNumber(const std::string &s) const	NxsTaxaBlock	[inline, protected]
ChangeTaxonLabel(unsigned i, NxsString s)	NxsTaxaBlock	[virtual]
CharLabelToNumber(NxsString s) NCL_COULD_BE_CONST	NxsBlock	[virtual]
CheckCapitalizedTaxonLabel(const std::string &s) const	NxsTaxaBlock	[protected]
CloneBlock(NxsBlockMapper &memo) const	NxsBlock	[virtual]
DemandEquals(NxsToken &token, const char *contextString) const	NxsBlock	[inline, protected]
DemandIsAtEquals(NxsToken &token, const char *contextString) const	NxsBlock	[protected]
DemandPositiveInt(NxsToken &token, const char *contextString) const	NxsBlock	[protected]
Disable()	NxsBlock
Enable()	NxsBlock
FindTaxon(const NxsString &label) const	NxsTaxaBlock	[virtual]
GenerateNxsException(NxsToken &token, const char *message=NULL) const	NxsBlock	[protected]
GenerateUnexpectedTokenNxsException(NxsToken &token, const char *expected=NULL) const	NxsBlock	[protected]
GetAllLabels() const	NxsTaxaBlockAPI	[virtual]
GetBlockIDCommandString() const	NxsBlock	[inline]
GetID() const	NxsBlock
GetImpliedBlocks()	NxsBlock	[virtual]
GetImpliedBlocksConst() const	NxsBlock	[virtual]
GetIndicesForLabel(const std::string &label, NxsUnsignedSet *inds) const	NxsTaxaBlock	[virtual]
GetIndicesFromSetOrAsNumber(const std::string &label, NxsUnsignedSet *inds, const NxsUnsignedSetMap &itemSets, const unsigned maxInd, const char *itemType)	NxsLabelToIndicesMapper	[protected, static]
GetIndicesFromSets(const std::string &label, NxsUnsignedSet *inds, const NxsUnsignedSetMap &itemSets)	NxsLabelToIndicesMapper	[protected, static]
GetMaxIndex() const	NxsTaxaBlock	[virtual]
GetMaxTaxonLabelLength()	NxsTaxaBlock	[virtual]
GetNexus() const	NxsBlock	[inline]
GetNTax() const	NxsTaxaBlock	[inline, virtual]
GetNTaxTotal() const	NxsTaxaBlock	[inline, virtual]
GetNumActiveTaxa() const	NxsTaxaBlock	[inline, virtual]
GetNumTaxonLabels() const	NxsTaxaBlock	[virtual]
GetTaxonLabel(unsigned i) const	NxsTaxaBlock	[virtual]
HandleBasicBlockCommands(NxsToken &token)	NxsBlock	[protected]
HandleBlockIDCommand(NxsToken &token)	NxsBlock	[virtual]
HandleEndblock(NxsToken &token)	NxsBlock	[virtual]
HandleLinkCommand(NxsToken &token)	NxsBlock	[virtual]
HandleTaxLabels(NxsToken &token)	NxsTaxaBlock	[virtual]
HandleTitleCommand(NxsToken &token)	NxsBlock	[virtual]
ImplementsLinkAPI() const	NxsBlock
InactivateTaxa(const std::set< unsigned > &)	NxsTaxaBlock	[inline, virtual]
InactivateTaxon(unsigned)	NxsTaxaBlock	[inline, virtual]
IsActiveTaxon(unsigned i) const	NxsTaxaBlock	[inline, virtual]
IsAlreadyDefined(const std::string &label)	NxsTaxaBlock	[virtual]
IsEmpty() NCL_COULD_BE_CONST	NxsBlock
IsEnabled() NCL_COULD_BE_CONST	NxsBlock
IsUserSupplied() NCL_COULD_BE_CONST	NxsBlock
NeedsQuotes(unsigned i)	NxsTaxaBlock
NxsBlock()	NxsBlock
Read(NxsToken &token)	NxsTaxaBlock	[protected, virtual]
Report(std::ostream &out) NCL_COULD_BE_CONST	NxsTaxaBlock	[virtual]
Reset()	NxsTaxaBlock	[virtual]
SetImplementsLinkAPI(bool v)	NxsBlock
SetNexus(NxsReader *nxsptr)	NxsBlock	[inline, virtual]
SetNtax(unsigned n)	NxsTaxaBlock	[virtual]
SkippingCommand(NxsString commandName)	NxsBlock	[virtual]
TaxLabelToNumber(const std::string &label) const	NxsTaxaBlock	[virtual]
TaxonLabelToNumber(NxsString s) const	NxsBlock	[virtual]
WriteAsNexus(std::ostream &out) const	NxsTaxaBlock	[virtual]
WriteLinkCommand(std::ostream &out) const	NxsBlock	[virtual]
WriteTaxLabelsCommand(std::ostream &out) const	NxsTaxaBlock	[virtual]
~NxsBlock()	NxsBlock	[virtual]