The default implementation of the NxsTaxaBlockAPI that is used to parse TAXA blocks into a list of unique (case-insensitive) labels. More...
#include <nxstaxablock.h>
Public Member Functions | |
| virtual unsigned | AddTaxonLabel (const std::string &s) |
| void | ChangeTaxonLabel (unsigned i, NxsString s) |
| unsigned | TaxLabelToNumber (const std::string &label) const |
| unsigned | FindTaxon (const NxsString &label) const |
| bool | IsAlreadyDefined (const std::string &label) |
| unsigned | GetMaxTaxonLabelLength () |
| unsigned | GetNTax () const |
| unsigned | GetNTaxTotal () const |
| unsigned | GetNumTaxonLabels () const |
| NxsString | GetTaxonLabel (unsigned i) const |
| void | HandleTaxLabels (NxsToken &token) |
| bool | NeedsQuotes (unsigned i) |
| virtual void | Report (std::ostream &out) NCL_COULD_BE_CONST |
| virtual void | Reset () |
| void | SetNtax (unsigned n) |
| void | WriteAsNexus (std::ostream &out) const |
| virtual unsigned | GetNumActiveTaxa () const |
| virtual bool | IsActiveTaxon (unsigned i) const |
| virtual unsigned | InactivateTaxa (const std::set< unsigned > &) |
| virtual unsigned | ActivateTaxa (const std::set< unsigned > &) |
| virtual unsigned | InactivateTaxon (unsigned) |
| virtual unsigned | ActivateTaxon (unsigned) |
| void | WriteTaxLabelsCommand (std::ostream &out) const |
| unsigned | GetMaxIndex () const |
| unsigned | GetIndicesForLabel (const std::string &label, NxsUnsignedSet *inds) const |
Protected Member Functions | |
| virtual void | Read (NxsToken &token) |
| void | CheckCapitalizedTaxonLabel (const std::string &s) const |
| unsigned | CapitalizedTaxLabelToNumber (const std::string &s) const |
The default implementation of the NxsTaxaBlockAPI that is used to parse TAXA blocks into a list of unique (case-insensitive) labels.
Definition at line 142 of file nxstaxablock.h.
1.6.3
