NxsTreesBlock Member List

This is the complete list of members for NxsTreesBlock, including all inherited members.
AddNewPartition(const std::string &label, const NxsPartition &inds)NxsTreesBlock [virtual]
BriefReport(NxsString &s) NCL_COULD_BE_CONSTNxsTreesBlock [virtual]
CharLabelToNumber(NxsString s) NCL_COULD_BE_CONSTNxsBlock [virtual]
CloneBlock(NxsBlockMapper &memo) const NxsBlock [virtual]
constructingTaxaBlockNxsTreesBlock [protected]
DemandEquals(NxsToken &token, const char *contextString) const NxsBlock [inline, protected]
DemandIsAtEquals(NxsToken &token, const char *contextString) const NxsBlock [protected]
DemandPositiveInt(NxsToken &token, const char *contextString) const NxsBlock [protected]
Disable()NxsBlock
Enable()NxsBlock
GenerateNxsException(NxsToken &token, const char *message=NULL) const NxsBlock [protected]
GenerateUnexpectedTokenNxsException(NxsToken &token, const char *expected=NULL) const NxsBlock [protected]
GetBlockIDCommandString() const NxsBlock [inline]
GetBlockName() const NxsTreesBlock [inline, virtual]
GetFullTreeDescription(unsigned i) const NxsTreesBlock
GetID() const NxsBlock
GetImpliedBlocks()NxsTreesBlock [inline, virtual]
GetImpliedBlocksConst() const NxsBlock [virtual]
GetIndicesForLabel(const std::string &label, NxsUnsignedSet *inds) const NxsTreesBlock [virtual]
GetIndicesFromSetOrAsNumber(const std::string &label, NxsUnsignedSet *inds, const NxsUnsignedSetMap &itemSets, const unsigned maxInd, const char *itemType)NxsLabelToIndicesMapper [protected, static]
GetIndicesFromSets(const std::string &label, NxsUnsignedSet *inds, const NxsUnsignedSetMap &itemSets)NxsLabelToIndicesMapper [protected, static]
GetNexus() const NxsBlock [inline]
GetNumDefaultTree()NxsTreesBlock
GetNumTrees()NxsTreesBlock
GetNumTrees() const NxsTreesBlock
GetProcessAllTreesDuringParse() const NxsTreesBlock [inline]
GetTaxaLinkStatus() const NxsTaxaBlockSurrogate [inline]
GetTranslatedTreeDescription(unsigned i)NxsTreesBlock
GetTreeDescription(unsigned i)NxsTreesBlock
GetTreeName(unsigned i)NxsTreesBlock
HandleBasicBlockCommands(NxsToken &token)NxsBlock [protected]
HandleBlockIDCommand(NxsToken &token)NxsBlock [virtual]
HandleEndblock(NxsToken &token)NxsBlock [virtual]
HandleLinkCommand(NxsToken &token)NxsTreesBlock [inline, virtual]
HandleTaxLabels(NxsToken &token)NxsTaxaBlockSurrogate [protected, virtual]
HandleTitleCommand(NxsToken &token)NxsBlock [virtual]
ImplementsLinkAPI() const NxsBlock
IsActiveTaxon(unsigned i) const NxsTaxaBlockSurrogate [inline, virtual]
IsDefaultTree(unsigned i)NxsTreesBlock
IsEmpty() NCL_COULD_BE_CONSTNxsBlock
IsEnabled() NCL_COULD_BE_CONSTNxsBlock
IsRootedTree(unsigned i)NxsTreesBlock
IsUserSupplied() NCL_COULD_BE_CONSTNxsBlock
NxsBlock()NxsBlock
NxsTreesBlock(NxsTaxaBlockAPI *tb)NxsTreesBlock
processAllTreesDuringParseNxsTreesBlock [protected]
Read(NxsToken &token)NxsTreesBlock [protected, virtual]
ReplaceTaxaBlockPtr(NxsTaxaBlockAPI *tb)NxsTreesBlock
Report(std::ostream &out) NCL_COULD_BE_CONSTNxsTreesBlock [virtual]
Reset()NxsTreesBlock [virtual]
SetImplementsLinkAPI(bool v)NxsBlock
SetNexus(NxsReader *nxsptr)NxsTreesBlock [inline, virtual]
SetProcessAllTreesDuringParse(bool s)NxsTreesBlock [inline]
setValidationCallbacks(ProcessedTreeValidationFunction func, void *blob)NxsTreesBlock [inline]
SkippingCommand(NxsString commandName)NxsBlock [virtual]
TaxonLabelToNumber(NxsString s) const NxsBlock [virtual]
TreeLabelToNumber(const std::string &name) const NxsTreesBlock
treesNxsTreesBlock [mutable, protected]
WriteAsNexus(std::ostream &out) const NxsTreesBlock [virtual]
writeFromNodeEdgeDataStructureNxsTreesBlock [protected]
WriteLinkCommand(std::ostream &out) const NxsTreesBlock [inline, virtual]
~NxsBlock()NxsBlock [virtual]
~NxsTreesBlock()NxsTreesBlock [virtual]
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Generated on Mon Mar 29 16:37:13 2010 for NCL by  doxygen 1.6.3