NxsUnalignedBlock Member List

This is the complete list of members for NxsUnalignedBlock, including all inherited members.

CharLabelToNumber(NxsString s) NCL_COULD_BE_CONST	NxsBlock	[virtual]
CloneBlock(NxsBlockMapper &memo) const	NxsBlock	[virtual]
DebugShowMatrix(std::ostream &out, const char *marginText=NULL) NCL_COULD_BE_CONST	NxsUnalignedBlock	[virtual]
DemandEquals(NxsToken &token, const char *contextString) const	NxsBlock	[inline, protected]
DemandIsAtEquals(NxsToken &token, const char *contextString) const	NxsBlock	[protected]
DemandPositiveInt(NxsToken &token, const char *contextString) const	NxsBlock	[protected]
Disable()	NxsBlock
Enable()	NxsBlock
FormatState(NxsDiscreteDatum x) const	NxsUnalignedBlock	[protected]
GenerateNxsException(NxsToken &token, const char *message=NULL) const	NxsBlock	[protected]
GenerateUnexpectedTokenNxsException(NxsToken &token, const char *expected=NULL) const	NxsBlock	[protected]
GetBlockIDCommandString() const	NxsBlock	[inline]
GetDataType() const	NxsUnalignedBlock	[inline]
GetID() const	NxsBlock
GetImpliedBlocks()	NxsUnalignedBlock	[inline, virtual]
GetImpliedBlocksConst() const	NxsBlock	[virtual]
GetInternalRepresentation(unsigned i, unsigned j)	NxsUnalignedBlock
GetMissingSymbol()	NxsUnalignedBlock	[inline]
GetNexus() const	NxsBlock	[inline]
GetNTaxTotal()	NxsUnalignedBlock	[inline]
GetNTaxTotal() const	NxsUnalignedBlock	[inline, virtual]
GetNTaxWithData()	NxsUnalignedBlock	[inline]
GetNumEquates()	NxsUnalignedBlock	[inline]
GetNumMatrixRows()	NxsUnalignedBlock	[inline]
GetNumStates(unsigned i, unsigned j)	NxsUnalignedBlock
GetOriginalDataType() const	NxsUnalignedBlock	[inline]
GetSymbols()	NxsUnalignedBlock	[inline]
GetTaxaLinkStatus() const	NxsTaxaBlockSurrogate	[inline]
HandleBasicBlockCommands(NxsToken &token)	NxsBlock	[protected]
HandleBlockIDCommand(NxsToken &token)	NxsBlock	[virtual]
HandleDimensions(NxsToken &token)	NxsUnalignedBlock	[protected]
HandleEndblock(NxsToken &token)	NxsUnalignedBlock	[protected, virtual]
HandleFormat(NxsToken &token)	NxsUnalignedBlock	[protected, virtual]
HandleLinkCommand(NxsToken &token)	NxsUnalignedBlock	[inline, virtual]
HandleMatrix(NxsToken &token)	NxsUnalignedBlock	[protected, virtual]
HandleNextState(NxsToken &token, unsigned taxInd, unsigned charInd, NxsDiscreteStateRow &new_row, const NxsString &)	NxsUnalignedBlock	[protected, virtual]
HandleTaxLabels(NxsToken &token)	NxsTaxaBlockSurrogate	[protected, virtual]
HandleTitleCommand(NxsToken &token)	NxsBlock	[virtual]
ImplementsLinkAPI() const	NxsBlock
IsActiveTaxon(unsigned i) const	NxsTaxaBlockSurrogate	[inline, virtual]
IsEmpty() NCL_COULD_BE_CONST	NxsBlock
IsEnabled() NCL_COULD_BE_CONST	NxsBlock
IsInSymbols(char ch)	NxsUnalignedBlock	[protected]
IsLabels()	NxsUnalignedBlock	[inline]
IsMissingState(unsigned i, unsigned j)	NxsUnalignedBlock
IsPolymorphic(unsigned i, unsigned j)	NxsUnalignedBlock
IsRespectCase()	NxsUnalignedBlock	[inline]
IsUserSupplied() NCL_COULD_BE_CONST	NxsBlock
NumCharsForTaxon(unsigned i)	NxsUnalignedBlock
NxsBlock()	NxsBlock
NxsUnalignedBlock(NxsTaxaBlockAPI *tb)	NxsUnalignedBlock
Read(NxsToken &token)	NxsUnalignedBlock	[protected, virtual]
Report(std::ostream &out) NCL_COULD_BE_CONST	NxsUnalignedBlock	[virtual]
Reset()	NxsUnalignedBlock	[virtual]
ResetSymbols()	NxsUnalignedBlock	[protected]
SetImplementsLinkAPI(bool v)	NxsBlock
SetNexus(NxsReader *nxsptr)	NxsUnalignedBlock	[inline, virtual]
SkippingCommand(NxsString commandName)	NxsBlock	[virtual]
TaxonLabelToNumber(NxsString s) const	NxsBlock	[virtual]
WriteAsNexus(std::ostream &out) const	NxsUnalignedBlock	[virtual]
WriteFormatCommand(std::ostream &out) const	NxsUnalignedBlock
WriteLinkCommand(std::ostream &out) const	NxsUnalignedBlock	[inline, virtual]
WriteMatrixCommand(std::ostream &out) const	NxsUnalignedBlock
~NxsBlock()	NxsBlock	[virtual]
~NxsUnalignedBlock()	NxsUnalignedBlock	[virtual]