Likelihood

Class SiteLikelihood.RateLikelihood

java.lang.Object

Likelihood.SiteLikelihood.RateLikelihood

All Implemented Interfaces:

java.io.Serializable

Enclosing class:

SiteLikelihood

public static class SiteLikelihood.RateLikelihood
extends java.lang.Object
implements java.io.Serializable

Stores the result of the likelihood calculations for a single site and a single rate class.

Version:

2.0

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
SiteLikelihood.RateLikelihood(Real l, java.util.Map<java.lang.String,SiteLikelihood.NodeLikelihood> nodeLikelihoods) Default constructor

Method Summary

Methods

Modifier and Type	Method and Description
Real	getLikelihood() Returns the likelihood.
SiteLikelihood.NodeLikelihood	getNodeLikelihood(java.lang.String node) Returns the likelihood results for a given node on the tree
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

SiteLikelihood.RateLikelihood

public SiteLikelihood.RateLikelihood(Real l,
                             java.util.Map<java.lang.String,SiteLikelihood.NodeLikelihood> nodeLikelihoods)

Default constructor

Parameters:

l - The likelihood for this site and rate

nodeLikelihoods - The invidual node likelihoods for this site and rate

Method Detail

getLikelihood

public Real getLikelihood()

Returns the likelihood.

Returns:

The likelihood

getNodeLikelihood

public SiteLikelihood.NodeLikelihood getNodeLikelihood(java.lang.String node)
                                                throws SiteLikelihood.LikelihoodException

Returns the likelihood results for a given node on the tree

Parameters:

node - The node to return the result for

Returns:

The likelihood result for the given node

Throws:

SiteLikelihood.LikelihoodException - Thrown if no likelihood has been calculated for the given node

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object