Uses of Class
Likelihood.Calculator

Packages that use Calculator

Package	Description
Likelihood	Provides classes for calculating the likelihood of a tree given a model and an alignment.
ModelTest

Uses of Calculator in Likelihood

Subclasses of Calculator in Likelihood

Modifier and Type	Class and Description
class	StandardCalculator Calculates the likelihood for different parameter values.

Uses of Calculator in ModelTest

Methods in ModelTest that return Calculator

Modifier and Type	Method and Description
Calculator<Likelihood>	TestInstance.getCalculator() Get the calculator associated with this instance

Constructors in ModelTest with parameters of type Calculator

Constructor and Description
TestInstance(Calculator<Likelihood> c, Parameters p) Creates an instance
TestInstance(Calculator<Likelihood> c, Parameters p, Adapter adapter, Alignment distinct) Creates a named instance.
TestInstance(Calculator<Likelihood> c, Parameters p, java.lang.String name) Creates a named instance.
TestInstance(Calculator<Likelihood> c, Parameters p, java.lang.String name, Adapter adapter, Alignment distinct) Creates a named instance.