ModelTest

Interface Adapter

All Known Implementing Classes:

EmpiricalAdapter, EqualAdapter, IdentityAdapter

public interface Adapter

Interface for an adapter. See Whelan et al 2015 for more on adapters

Version:

2.0

Method Summary

Methods

Modifier and Type	Method and Description
double	likelihood(Alignment distinct) Return the likelihood of the adapter given the distinct alignment
int	numberParameters() Return the number of parameters associated with the adapter

Method Detail

likelihood

double likelihood(Alignment distinct)

Return the likelihood of the adapter given the distinct alignment

Parameters:

distinct - The distinct alignment

Returns:

The likelihood of the adapter

numberParameters

int numberParameters()

Return the number of parameters associated with the adapter

Returns:

The number of parameters