ModelTest

Class IdentityAdapter

java.lang.Object

ModelTest.IdentityAdapter

All Implemented Interfaces:

Adapter

public class IdentityAdapter
extends java.lang.Object
implements Adapter

The identity adapter (i.e. has a log likelihood of 0 and no parameters)

Version:

2.0

Constructor Summary

Constructors

Constructor and Description
IdentityAdapter() Create an instance

Method Summary

Methods

Modifier and Type	Method and Description
double	likelihood(Alignment distinct) Return the likelihood of the adapter given the distinct alignment
int	numberParameters() Return the number of parameters associated with the adapter

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IdentityAdapter

public IdentityAdapter()

Create an instance

Method Detail

likelihood

public double likelihood(Alignment distinct)

Description copied from interface: Adapter

Return the likelihood of the adapter given the distinct alignment

Specified by:

likelihood in interface Adapter

Parameters:

distinct - The distinct alignment

Returns:

The likelihood of the adapter

numberParameters

public int numberParameters()

Description copied from interface: Adapter

Return the number of parameters associated with the adapter

Specified by:

numberParameters in interface Adapter

Returns:

The number of parameters