Package Models

Provides classes for defining a phylogenetic model.

See: Description

Class Summary

Class	Description
Distributions	Class to calculate stationary and quasi-stationary distributions
DNAModelFactory	A factory for easing the creation of many standard DNA models
DuplicationModelFactory	A factory for easing the creation of some simple gene-family models
Model	Represents an evolutionary model.
RateCategory	Represents a rate category of a phylogenetic model.
RYModelFactory	A factory for easing the creation of the standard RY model

Enum Summary

Enum	Description
Distributions.Calculation	Enumeration of the different methods of calculating a distribution
DNAModelFactory.DNAModel	Represents the various types of DNA models
RateCategory.FrequencyType	Enumeration of the different ways of defining the root frequency

Exception Summary

Exception	Description
Distributions.DistributionsException	Exception for use there is a problem calculating a distribution
Model.ModelException	Exception thrown when there is a problem with the model
RateCategory.RateException	Exception thrown if there is a problem within a RateClass

Package Models Description

Provides classes for defining a phylogenetic model. Includes a class to calculate stationary and quasi-station distributions.