, including all inherited members.
CharLabelToNumber(NxsString s) NCL_COULD_BE_CONST | NxsBlock | [virtual] |
CloneBlock(NxsBlockMapper &memo) const | NxsBlock | [virtual] |
DemandEquals(NxsToken &token, const char *contextString) const | NxsBlock | [inline, protected] |
DemandIsAtEquals(NxsToken &token, const char *contextString) const | NxsBlock | [protected] |
DemandPositiveInt(NxsToken &token, const char *contextString) const | NxsBlock | [protected] |
Disable() | NxsBlock | |
Enable() | NxsBlock | |
GenerateNxsException(NxsToken &token, const char *message=NULL) const | NxsBlock | [protected] |
GenerateUnexpectedTokenNxsException(NxsToken &token, const char *expected=NULL) const | NxsBlock | [protected] |
GetBlockIDCommandString() const | NxsBlock | [inline] |
GetBlockName() const | NxsDistancesBlock | [inline, virtual] |
GetDistance(unsigned i, unsigned j) const | NxsDistancesBlock | |
GetID() const | NxsBlock | |
GetImpliedBlocks() | NxsDistancesBlock | [inline, virtual] |
GetImpliedBlocksConst() const | NxsBlock | [virtual] |
GetMissingSymbol() NCL_COULD_BE_CONST | NxsDistancesBlock | |
GetNchar() NCL_COULD_BE_CONST | NxsDistancesBlock | |
GetNexus() const | NxsBlock | [inline] |
GetTaxaLinkStatus() const | NxsTaxaBlockSurrogate | [inline] |
GetTriangle() NCL_COULD_BE_CONST | NxsDistancesBlock | |
HandleBasicBlockCommands(NxsToken &token) | NxsBlock | [protected] |
HandleBlockIDCommand(NxsToken &token) | NxsBlock | [virtual] |
HandleDimensionsCommand(NxsToken &token) | NxsDistancesBlock | [protected] |
HandleEndblock(NxsToken &token) | NxsBlock | [virtual] |
HandleFormatCommand(NxsToken &token) | NxsDistancesBlock | [protected] |
HandleLinkCommand(NxsToken &token) | NxsDistancesBlock | [inline, virtual] |
HandleMatrixCommand(NxsToken &token) | NxsDistancesBlock | [protected] |
HandleTaxLabels(NxsToken &token) | NxsTaxaBlockSurrogate | [protected, virtual] |
HandleTitleCommand(NxsToken &token) | NxsBlock | [virtual] |
ImplementsLinkAPI() const | NxsBlock | |
IsActiveTaxon(unsigned i) const | NxsTaxaBlockSurrogate | [inline, virtual] |
IsDiagonal() NCL_COULD_BE_CONST | NxsDistancesBlock | |
IsEmpty() NCL_COULD_BE_CONST | NxsBlock | |
IsEnabled() NCL_COULD_BE_CONST | NxsBlock | |
IsInterleave() NCL_COULD_BE_CONST | NxsDistancesBlock | |
IsLabels() NCL_COULD_BE_CONST | NxsDistancesBlock | |
IsLowerTriangular() NCL_COULD_BE_CONST | NxsDistancesBlock | |
IsMissing(unsigned i, unsigned j) const | NxsDistancesBlock | |
IsRectangular() NCL_COULD_BE_CONST | NxsDistancesBlock | |
IsUpperTriangular() NCL_COULD_BE_CONST | NxsDistancesBlock | |
IsUserSupplied() NCL_COULD_BE_CONST | NxsBlock | |
NxsBlock() | NxsBlock | |
NxsDistancesBlock(NxsTaxaBlockAPI *t) | NxsDistancesBlock | |
Read(NxsToken &token) | NxsDistancesBlock | [protected, virtual] |
Report(std::ostream &out) NCL_COULD_BE_CONST | NxsDistancesBlock | [virtual] |
Reset() | NxsDistancesBlock | [virtual] |
SetDistance(unsigned i, unsigned j, double d) | NxsDistancesBlock | |
SetImplementsLinkAPI(bool v) | NxsBlock | |
SetMissing(unsigned i, unsigned j) | NxsDistancesBlock | |
SetNchar(unsigned i) | NxsDistancesBlock | |
SetNexus(NxsReader *nxsptr) | NxsDistancesBlock | [inline, virtual] |
SkippingCommand(NxsString commandName) | NxsBlock | [virtual] |
TaxonLabelToNumber(NxsString s) const | NxsBlock | [virtual] |
WriteAsNexus(std::ostream &out) const | NxsDistancesBlock | [virtual] |
WriteLinkCommand(std::ostream &out) const | NxsDistancesBlock | [inline, virtual] |
~NxsBlock() | NxsBlock | [virtual] |
~NxsDistancesBlock() | NxsDistancesBlock | [virtual] |