This class handles reading and storage for the NEXUS block DISTANCES. More...
#include <nxsdistancesblock.h>
Public Member Functions | |
| NxsDistancesBlock (NxsTaxaBlockAPI *t) | |
| virtual | ~NxsDistancesBlock () |
| double | GetDistance (unsigned i, unsigned j) const |
| char | GetMissingSymbol () NCL_COULD_BE_CONST |
| unsigned | GetNchar () NCL_COULD_BE_CONST |
| unsigned | GetTriangle () NCL_COULD_BE_CONST |
| bool | IsRectangular () NCL_COULD_BE_CONST |
| bool | IsDiagonal () NCL_COULD_BE_CONST |
| bool | IsInterleave () NCL_COULD_BE_CONST |
| bool | IsLabels () NCL_COULD_BE_CONST |
| bool | IsLowerTriangular () NCL_COULD_BE_CONST |
| bool | IsMissing (unsigned i, unsigned j) const |
| bool | IsUpperTriangular () NCL_COULD_BE_CONST |
| virtual void | Report (std::ostream &out) NCL_COULD_BE_CONST |
| virtual void | Reset () |
| void | SetDistance (unsigned i, unsigned j, double d) |
| void | SetMissing (unsigned i, unsigned j) |
| void | SetNchar (unsigned i) |
| void | SetNexus (NxsReader *nxsptr) |
| virtual const std::string & | GetBlockName () const |
| virtual VecBlockPtr | GetImpliedBlocks () |
| virtual void | HandleLinkCommand (NxsToken &token) |
| virtual void | WriteLinkCommand (std::ostream &out) const |
| void | WriteAsNexus (std::ostream &out) const |
Protected Member Functions | |
| void | HandleDimensionsCommand (NxsToken &token) |
| void | HandleFormatCommand (NxsToken &token) |
| void | HandleMatrixCommand (NxsToken &token) |
| virtual void | Read (NxsToken &token) |
This class handles reading and storage for the NEXUS block DISTANCES.
It overrides the member functions Read and Reset, which are abstract virtual functions in the base class NxsBlock. Below is a table showing the correspondence between the elements of a DISTANCES block and the variables and member functions that can be used to access each piece of information stored. > NEXUS command Command attribute Data Members Member Functions ------------------------------------------------------------------------ DIMENSIONS NEWTAXA newtaxa
NTAX ntax GetNtax
NCHAR nchar GetNchar
FORMAT TRIANGLE triangle GetTriangle IsUpperTriangular IsLowerTriangular IsRectangular
[NO]DIAGONAL diagonal IsDiagonal
[NO]LABELS labels IsLabels
MISSING missing GetMissingSymbol
INTERLEAVE interleave IsInterleave
TAXLABELS (stored in the (access through NxsTaxaBlockAPI data member taxa) object)
MATRIX matrix GetDistance IsMissing SetMissing SetDistance ------------------------------------------------------------------------ >
Definition at line 66 of file nxsdistancesblock.h.
1.6.3
