| Package | Description |
|---|---|
| Ancestors |
Provides classed to calculate ancestral reconstruction.
|
| Class and Description |
|---|
| AncestralException
Exception related to ancestral reconstruction
|
| AncestralJoint
Abstract class that the two different ways of doing ancestral reconstruction
extend.
|
| AncestralMarginal
Class to perform marginal reconstruction of internal nodes.
|
| AncestralMarginal.Result
Class to store the results of a marginal ancestral reconstruction
|
| AncestralMarginal.SiteResult
Class to store the results of a marginal ancestral reconstruction for a single
site
|
| Assignment
Stores the ancestral reconstruction assignment for a single site
|