Uses of Package
Parameters

Packages that use Parameters

Package	Description
Ancestors	Provides classed to calculate ancestral reconstruction.
Likelihood	Provides classes for calculating the likelihood of a tree given a model and an alignment.
ModelTest
Models	Provides classes for defining a phylogenetic model.
Optimizers	Provides classes for optimising a likelihood.
Parameters	Provides classes for defining parameters used in the various calculations.
Simulations	Provides a class to create simulated data.
Trees	Provides classes to define a tree.

Classes in Parameters used by Ancestors

Class and Description
Parameters Represents a set of parameters
Parameters.ParameterException Exception related to the parameters

Classes in Parameters used by Likelihood

Class and Description
Parameter Represents a parameter of a model
Parameters Represents a set of parameters
Parameters.ParameterException Exception related to the parameters

Classes in Parameters used by ModelTest

Class and Description
Parameters Represents a set of parameters

Classes in Parameters used by Models

Class and Description
Parameters Represents a set of parameters
Parameters.ParameterException Exception related to the parameters

Classes in Parameters used by Optimizers

Class and Description
Parameters Represents a set of parameters

Classes in Parameters used by Parameters

Class and Description
Parameter Represents a parameter of a model
Parameters Represents a set of parameters
Parameters.ParameterException Exception related to the parameters

Classes in Parameters used by Simulations

Class and Description
Parameters Represents a set of parameters
Parameters.ParameterException Exception related to the parameters

Classes in Parameters used by Trees

Class and Description
Parameters Represents a set of parameters
Parameters.ParameterException Exception related to the parameters