A B C D E F G H I J K L M N O P Q R S T U V W

W

weightedRF(Tree) - Method in class Trees.Tree

Calculates the weighted (by branch length) RF distance between this tree and another tree

writeFile(Alignment, File) - Static method in class Alignments.DuplicationAlignment

Writes a alignment to a file in the duplication alignment format described above.

writeFile(Alignment, File) - Static method in class Alignments.FastaAlignment

Writes a alignment to a file in the format described in FastaAlignment.fromFile(java.io.File).

writeFile(Alignment, File) - Static method in class Alignments.GenericAlignment

Writes a alignment to a file in the format described in GenericAlignment.fromFile(java.io.File).

writeFile(Alignment, File) - Static method in class Alignments.PhylipAlignment

Writes a alignment to a file in the format described in PhylipAlignment.fromFile(java.io.File).

writeFile(double[], File) - Static method in class Utils.Array1D

Write an array to a file

writeFilePAML(Alignment, File) - Static method in class Alignments.PhylipAlignment

Writes a alignment to a file in the format described in PhylipAlignment.fromFile(java.io.File).

WrongNumberOfVariables - Exception in Maths

Exception that is thrown if a function is passed the wrong number of variables

WrongNumberOfVariables(String, int, int) - Constructor for exception Maths.WrongNumberOfVariables

Default constructor

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