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U

UnexpectedError - Error in Exceptions
Represents an error that should never occur.
UnexpectedError(Throwable) - Constructor for error Exceptions.UnexpectedError
Default constructor
UnexpectedError() - Constructor for error Exceptions.UnexpectedError
Constructor to use when no other throwable caused the problem
UniqueSite - Class in Alignments
Used to represent a unique site in an alignment.
UniqueSite(Site, int) - Constructor for class Alignments.UniqueSite
Default constructor
upper() - Method in class Utils.Range
Gets the upper value
Utils - package Utils
Provides various utility classes.
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