- IdentityAdapter - Class in ModelTest
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The identity adapter (i.e.
- IdentityAdapter() - Constructor for class ModelTest.IdentityAdapter
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Create an instance
- implemented() - Method in interface Maths.FunctionParser
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Returns a list of function names that this class can calculate
- index(double[]) - Static method in class Utils.Array1D
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Returns indexes from the input array in rank order.
- InputException - Exception in Exceptions
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General exception for an exception in or about an input file
- InputException(String, String, String, Throwable) - Constructor for exception Exceptions.InputException
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Default constructor
- inverse() - Method in interface Maths.Real
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Returns the inverse of this real (i.e.
- inverse() - Method in class Maths.SmallDouble
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- inverse() - Method in class Maths.SquareMatrix
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Calculates the inverse of this matrix and returns a new matrix as the result.
- inverse() - Method in class Maths.StandardDouble
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- isExternal(Branch) - Method in class Trees.Tree
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Tests whether the given branch is an external branch (i.e.
- isNonsingular() - Method in class Maths.LUDecomposition
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Is the matrix nonsingular?
- isSet(String) - Method in class Utils.SetSettings
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Tests whether a root level setting has been set
- isSet(String, String) - Method in class Utils.SetSettings
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Tests whether a setting within a groups has been set
- iterator() - Method in class Alignments.Alignment
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- iterator() - Method in class Models.Model
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- iterator() - Method in class Parameters.Parameters
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- iterator() - Method in class Trees.Tree
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