, including all inherited members.
| Add(NxsBlock *newBlock) | NxsReader | [virtual] |
| AddBlockToUsedBlockList(const std::string &, NxsBlock *, NxsToken *) | NxsReader | [protected] |
| AddFactory(NxsBlockFactory *) | NxsReader | [virtual] |
| AddReadBlock(const NxsString &blockID, NxsBlock *block) | NxsReader | [inline, virtual] |
| AMBIGUOUS_CONTENT_WARNING enum value | NxsReader | |
| AssignBlockPriority(NxsBlock *b, int priorityLevel) | NxsReader | |
| BlockIsASingeltonReader(NxsBlock *) const | NxsReader | [protected] |
| BlockListEmpty() | NxsReader | |
| BlockReadHook(const NxsString &currBlockName, NxsBlock *currBlock, NxsToken *token=NULL) | NxsReader | [protected] |
| ClearContent() | NxsReader | [virtual] |
| ClearUsedBlockList() | NxsReader | [virtual] |
| CoreExecutionTasks(NxsToken &token, bool notifyStartStop=true) | NxsReader | [protected] |
| CreateBlockFromFactories(const std::string &currBlockName, NxsToken &token, NxsBlockFactory **sourceOfBlock=NULL) | NxsReader | |
| cullIdenticalTaxaBlocks(bool v=true) | NxsReader | [inline] |
| DebugReportBlock(NxsBlock &nexusBlock) | NxsReader | [virtual] |
| DefaultErrorReportNxsReader(std::ostream *stdOutstream, std::ostream *errOutstream) | DefaultErrorReportNxsReader | [inline] |
| DeleteBlocksFromFactories() | NxsReader | [virtual] |
| DemoteBlocks(int priorityLevel=-1) | NxsReader | |
| DEPRECATED_WARNING enum value | NxsReader | |
| Detach(NxsBlock *newBlock) | NxsReader | |
| EnteringBlock(NxsString) | DefaultErrorReportNxsReader | [inline, virtual] |
| Execute(NxsToken &token, bool notifyStartStop=true) | NxsReader | [virtual] |
| ExecuteBlock(NxsToken &token, const NxsString &currBlockName, NxsBlock *currBlock, NxsBlockFactory *sourceOfBlock) | NxsReader | [protected] |
| ExecuteStarting() | NxsReader | [virtual] |
| ExecuteStopping() | NxsReader | [virtual] |
| ExitingBlock(NxsString blockName) | NxsReader | [virtual] |
| FATAL_WARNING enum value | NxsReader | |
| FindBlockByTitle(const BlockReaderList &chosenBlockList, const char *title, unsigned *nMatches) | NxsReader | [protected] |
| FindBlockOfTypeByTitle(const std::string &btype, const char *title, unsigned *nMatches) | NxsReader | [protected] |
| GetAllTitlesForBlock(const NxsBlock *b) const | NxsReader | |
| GetBlockPriority(NxsBlock *b) const | NxsReader | |
| GetBlocksFromLastExecuteInOrder() | NxsReader | [inline] |
| GetCharBlockByTitle(const char *title, unsigned *nMatches) | NxsReader | |
| GetLastStoredBlockByID(const std::string &key) | NxsReader | [protected] |
| GetLastStoredCharactersBlock() | NxsReader | |
| GetLastStoredTaxaBlock() | NxsReader | |
| GetLastStoredTreesBlock() | NxsReader | |
| getNCLCatchesSignals() | NxsReader | [static] |
| getNumSignalIntsCaught() | NxsReader | [static] |
| GetOriginalTaxaBlock(const NxsTaxaBlockAPI *) const | NxsReader | [protected] |
| GetSetOfAllUsedBlocks() | NxsReader | |
| GetTaxaBlockByTitle(const char *title, unsigned *nMatches) | NxsReader | |
| GetTaxaBlockFactory() | NxsReader | [inline] |
| GetTreesBlockByTitle(const char *title, unsigned *nMatches) | NxsReader | |
| GetUsedBlocks() | NxsReader | [inline] |
| GetUsedBlocksInOrder() | NxsReader | [inline] |
| IGNORE_WARNINGS enum value | NxsReader | |
| ILLEGAL_CONTENT_WARNING enum value | NxsReader | |
| IsRepeatedTaxaBlock(const NxsTaxaBlockAPI *) const | NxsReader | [inline, protected] |
| NCLCopyrightNotice() | NxsReader | |
| NCLHomePageURL() | NxsReader | |
| NCLNameAndVersion() | NxsReader | |
| NewBlockTitleCheckHook(const std::string &blockname, NxsBlock *p, NxsToken *token) | NxsReader | [protected] |
| NexusError(NxsString msg, file_pos pos, long line, long col) | DefaultErrorReportNxsReader | [inline, virtual] |
| NexusWarn(const std::string &msg, NxsWarnLevel warnLevel, file_pos pos, long line, long col) | DefaultErrorReportNxsReader | [inline, virtual] |
| NexusWarnToken(const std::string &m, NxsWarnLevel warnLevel, const ProcessedNxsToken &token) | NxsReader | [inline] |
| NexusWarnToken(const std::string &m, NxsWarnLevel warnLevel, const NxsToken &token) | NxsReader | [inline] |
| NxsReader() | NxsReader | |
| NxsWarnLevel enum name | NxsReader | |
| OutputComment(const NxsString &comment) | NxsReader | [virtual] |
| OVERWRITING_CONTENT_WARNING enum value | NxsReader | |
| parseFileWithReader(NxsReader &reader, const char *filepath, bool parsePrivateBlocks=true, bool storeTokenInfo=true) | NxsReader | [protected, static] |
| PositionInBlockList(NxsBlock *b) | NxsReader | |
| PostBlockReadingHook(NxsBlock &) | NxsReader | [protected, virtual] |
| PROBABLY_INCORRECT_CONTENT_WARNING enum value | NxsReader | |
| ReadFilepath(const char *filename) | NxsReader | |
| ReadFilestream(std::istream &inf) | NxsReader | |
| ReadStringAsNexusContent(const std::string &s) | NxsReader | |
| ReadUntilEndblock(NxsToken &token, const std::string &currBlockName) | NxsReader | [protected] |
| Reassign(NxsBlock *oldb, NxsBlock *newb) | NxsReader | |
| RegisterAltTitle(const NxsBlock *b, std::string t) | NxsReader | [protected] |
| RemoveBlockFromUsedBlockList(NxsBlock *) | NxsReader | |
| RemoveBlocksFromFactoriesFromUsedBlockLists() | NxsReader | [protected] |
| RemoveFactory(NxsBlockFactory *) | NxsReader | |
| SetAlwaysReportStatusMessages(bool v) | NxsReader | [inline] |
| setNCLCatchesSignals(bool) | NxsReader | [static] |
| setNumSignalsIntsCaught(unsigned) | NxsReader | [static] |
| SetTaxaBlockFactory(NxsTaxaBlockFactory *) | NxsReader | |
| SetWarningOutputLevel(NxsWarnLevel lev) | NxsReader | [inline] |
| SKIPPING_CONTENT_WARNING enum value | NxsReader | |
| SkippingBlock(NxsString blockName) | DefaultErrorReportNxsReader | [inline, virtual] |
| SkippingDisabledBlock(NxsString blockName) | DefaultErrorReportNxsReader | [inline, virtual] |
| statusMessage(const std::string &m) const | NxsReader | [virtual] |
| SUPPRESS_WARNINGS_LEVEL enum value | NxsReader | |
| UNCOMMON_SYNTAX_WARNING enum value | NxsReader | |
| WarningHandlingMode enum name | NxsReader | |
| WARNINGS_ARE_ERRORS enum value | NxsReader | |
| WARNINGS_TO_STDERR enum value | NxsReader | |
| WARNINGS_TO_STDOUT enum value | NxsReader | |
1.6.3
