NxsReader

Add AddBlockToUsedBlockList AddFactory AddReadBlock AMBIGUOUS_CONTENT_WARNING AssignBlockPriority BlockIsASingeltonReader BlockListEmpty BlockReadHook ClearContent ClearUsedBlockList CoreExecutionTasks CreateBlockFromFactories cullIdenticalTaxaBlocks DebugReportBlock DeleteBlocksFromFactories DemoteBlocks DEPRECATED_WARNING Detach EnteringBlock Execute ExecuteBlock ExecuteStarting ExecuteStopping ExitingBlock FATAL_WARNING FindBlockByTitle FindBlockOfTypeByTitle GetAllTitlesForBlock GetBlockPriority GetBlocksFromLastExecuteInOrder GetCharBlockByTitle GetLastStoredBlockByID GetLastStoredCharactersBlock GetLastStoredTaxaBlock GetLastStoredTreesBlock getNCLCatchesSignals getNumSignalIntsCaught GetOriginalTaxaBlock GetSetOfAllUsedBlocks GetTaxaBlockByTitle GetTaxaBlockFactory GetTreesBlockByTitle GetUsedBlocks GetUsedBlocksInOrder IGNORE_WARNINGS ILLEGAL_CONTENT_WARNING IsRepeatedTaxaBlock NCLCopyrightNotice NCLHomePageURL NCLNameAndVersion NewBlockTitleCheckHook NexusError NexusWarn NexusWarnToken NexusWarnToken NxsReader NxsWarnLevel OutputComment OVERWRITING_CONTENT_WARNING parseFileWithReader PositionInBlockList PostBlockReadingHook PROBABLY_INCORRECT_CONTENT_WARNING ReadFilepath ReadFilestream ReadStringAsNexusContent ReadUntilEndblock Reassign RegisterAltTitle RemoveBlockFromUsedBlockList RemoveBlocksFromFactoriesFromUsedBlockLists RemoveFactory SetAlwaysReportStatusMessages setNCLCatchesSignals setNumSignalsIntsCaught SetTaxaBlockFactory SetWarningOutputLevel SKIPPING_CONTENT_WARNING SkippingBlock SkippingDisabledBlock statusMessage SUPPRESS_WARNINGS_LEVEL UNCOMMON_SYNTAX_WARNING WarningHandlingMode WARNINGS_ARE_ERRORS WARNINGS_TO_STDERR WARNINGS_TO_STDOUT

bool NxsReader::ExecuteBlock ( NxsToken &  token, const NxsString &  currBlockName, NxsBlock *  currentBlock, NxsBlockFactory *  sourceOfBlock   ) [protected] Called internally when the NxsReader has found the correct NxsBlock to read a block in a file. `token` will be at the block ID. `currBlockName` will be the block ID as a string. `currentBlock` will be the block reader to be used `sourceOfBlock` is the factory that created the block (or 0L). If sourceOfBlock is not NULL then it will be alerted if the block is skipped (BlockSkipped() method) or there was an error in the read (BlockError() method). The factory is expected to delete the block instances in these cases (NxsReader will not refer to those instances again). The following steps occur: the EnteringBlock hook is called (if it returns false, the block will be skipped by calling NxsReader::SkippingBlock NxsBlock::Reset() is called on the reader block NxsBlock::Read() method of the reader block is called If an exception is generated, the NexusError is called. If no exception is generated by Read then the block is processed: if NxsReader::cullIdenticalTaxaBlocks(true) has been called before Execute and this is a repeated TAXA block, the block will be deleted. the BlockReadHook() will store all of the implied blocks (by calling NxsBlock::GetImpliedBlocks()) and the block itself. if one of the implied blocks is a repeated TAXA block and NxsReader::cullIdenticalTaxaBlocks(true) has been called, then the blocks NxsBlock::SwapEquivalentTaxaBlock() method will determine whether or not the duplicate taxa block can be deleted. each stored block will generate a call to NxsReader::AddBlockToUsedBlockList() ExitingBlock() is called PostBlockReadingHook() is called Definition at line 860 of file nxsreader.cpp.