NxsReader

Add AddBlockToUsedBlockList AddFactory AddReadBlock AMBIGUOUS_CONTENT_WARNING AssignBlockPriority BlockIsASingeltonReader BlockListEmpty BlockReadHook ClearContent ClearUsedBlockList CoreExecutionTasks CreateBlockFromFactories cullIdenticalTaxaBlocks DebugReportBlock DeleteBlocksFromFactories DemoteBlocks DEPRECATED_WARNING Detach EnteringBlock Execute ExecuteBlock ExecuteStarting ExecuteStopping ExitingBlock FATAL_WARNING FindBlockByTitle FindBlockOfTypeByTitle GetAllTitlesForBlock GetBlockPriority GetBlocksFromLastExecuteInOrder GetCharBlockByTitle GetLastStoredBlockByID GetLastStoredCharactersBlock GetLastStoredTaxaBlock GetLastStoredTreesBlock getNCLCatchesSignals getNumSignalIntsCaught GetOriginalTaxaBlock GetSetOfAllUsedBlocks GetTaxaBlockByTitle GetTaxaBlockFactory GetTreesBlockByTitle GetUsedBlocks GetUsedBlocksInOrder IGNORE_WARNINGS ILLEGAL_CONTENT_WARNING IsRepeatedTaxaBlock NCLCopyrightNotice NCLHomePageURL NCLNameAndVersion NewBlockTitleCheckHook NexusError NexusWarn NexusWarnToken NexusWarnToken NxsReader NxsWarnLevel OutputComment OVERWRITING_CONTENT_WARNING parseFileWithReader PositionInBlockList PostBlockReadingHook PROBABLY_INCORRECT_CONTENT_WARNING ReadFilepath ReadFilestream ReadStringAsNexusContent ReadUntilEndblock Reassign RegisterAltTitle RemoveBlockFromUsedBlockList RemoveBlocksFromFactoriesFromUsedBlockLists RemoveFactory SetAlwaysReportStatusMessages setNCLCatchesSignals setNumSignalsIntsCaught SetTaxaBlockFactory SetWarningOutputLevel SKIPPING_CONTENT_WARNING SkippingBlock SkippingDisabledBlock statusMessage SUPPRESS_WARNINGS_LEVEL UNCOMMON_SYNTAX_WARNING WarningHandlingMode WARNINGS_ARE_ERRORS WARNINGS_TO_STDERR WARNINGS_TO_STDOUT

virtual void NxsReader::NexusWarn ( const std::string &  s, NxsWarnLevel  warnLevel, file_pos  pos, long  line, long  col   ) [inline, virtual] This hook is called by the block readers when they encounter content that is interpretable but is questionable (or even illegal according to the NEXUS standard). The default NexusWarn behavior is to generate a NexusException for any warnLevel >= PROBABLY_INCORRECT_CONTENT_WARNING and to ignore all other warnings. Reimplemented in ExceptionRaisingNxsReader, and DefaultErrorReportNxsReader. Definition at line 207 of file nxsreader.h.