Demo's for testing lecture are at: http://phylo.bio.ku.edu/mephytis/index.html
| phylogenetics_intro_2018.pdf | Mark's intro to phylogenetics lecture slides. |
| huelsenbeck_programming_for_evo_biol.pdf | Huelsenbeck programming for evolutionary biologists (draft) |
| msa-2015.pdf | Mark's MSA lecture slides. |
| convincing-arg-model-selection.pdf | Some notes on model testing |
| Zwickl-WoodsHole2015-lecture.pdf | Derrick Zwickl's Searching slides |
| HolderTestingLectureWoodsHole.pdf | Mark's 2014 Topology testing lecture slides |
| 5-primates.nex | data used in testing demo with paup. |
| 5-taxa-HCG.tre | trees used in testing demo with paup. |
| HolderTestingLectureWoodsHole2013.pdf | Mark's Topology testing lecture slides |
| HolderTestingLectureNotesWH2012.pdf | Notes on the testing lecture. |
| Repository on GitHub | Version control for lecture materials |
| annotated.pdf | The beginnings of an annotated bibliography about the literature on topology testing. |
| Zotero group | Group for references about topology testing |
| pboot_flow_chart.pdf | Flow chart for the parametric bootstrapping lab |
| mb-mac-i386.tar.gz | MrBayes 3.2.1 compiled for Mac i386 (use "tar xfvz mb-mac-i386.tar.gz |
| simwithdice.nex | A NEXUS file with the data patterns that the class generated using 10-sided dice |
| coin_flip_mcmc.py | A Python implementation of the MCMC algorithm that John coded in lecture (he did his version in C++). |