PublicNexusReader

AddFactory AddReadAssumptionsBlock AddReadCharactersBlock AddReadDataBlock AddReadDistancesBlock AddReadTaxaBlock AddReadTreesBlock AddReadUnalignedBlock AddReadUnknownBlock ClearContent ClearUsedBlockList conversionOutputRecord DeleteBlocksFromFactories Execute GetAssumptionsBlock GetAssumptionsBlockTemplate GetCharactersBlock GetCharactersBlockTemplate GetDataBlockTemplate GetDistancesBlock GetDistancesBlockTemplate GetNumAssumptionsBlocks GetNumAssumptionsBlocks GetNumAssumptionsBlocks GetNumCharactersBlocks GetNumDistancesBlocks GetNumTaxaBlocks GetNumTreesBlocks GetNumUnalignedBlocks GetNumUnknownBlocks GetTaxaBlock GetTaxaBlockTemplate GetTreesBlock GetTreesBlockTemplate GetUnalignedBlock GetUnalignedBlockTemplate GetUnknownBlock GetUnknownBlockTemplate NEXUS_ASSUMPTIONS_BLOCK_BIT NEXUS_CHARACTERS_BLOCK_BIT NEXUS_DISTANCES_BLOCK_BIT NEXUS_SETS_BLOCK_BIT NEXUS_TREES_BLOCK_BIT NEXUS_UNALIGNED_BLOCK_BIT NEXUS_UNKNOWN_BLOCK_BIT NexusBlocksToRead parseFileOrThrow PostExecuteHook PublicNexusReader RegisterTaxa

NxsTaxaBlock * PublicNexusReader::RegisterTaxa ( const std::vector< std::string > &  tl  )  Registers the strings is the vector as taxon labels. a vector of taxon names. Returns: a new taxa block for the these taxa. This taxa block will also be stored in the reader so that future files can refer to these taxa. This function is useful if you want to programmatically create a NEXUS TAXA block and have the reader treat it in the same way as if the NxsTaxaBlock were read from a file This is is a convenience function that creates a NxsTaxaBlock, fills it, and then calls AddReadTaxaBlock. Returns: the block created. Definition at line 36 of file nxspublicblocks.cpp.