NxsCharactersBlock

AddNewCodonPosPartition AddNewExSet AddNewIndexSet AddNewPartition ApplyExset ApplyIncludeset AugmentedSymbolsToMixed CharLabelToNumber CharLabelToNumber codon CodonPosPartitionToPosList Consume continuous DataTypesEnum DebugShowMatrix dna ExcludeCharacter GetAllDatatypeMappers GetAllowAugmentingOfSequenceSymbols GetCharLabel GetContinuousValues GetDataType GetDatatypeMapForMixedType GetDatatypeName GetDefaultCodonPosPartitionName GetDiscreteMatrixRow GetExcludedIndexSet GetGapModeSetting GetGapSymbol GetImpliedBlocks GetIndicesForLabel GetInternalRepresentation GetItems GetMatchcharSymbol GetMaximalStateSetOfColumn GetMaxObsNumStates GetMissingSymbol GetNamedStateSetOfColumn GetNChar GetNCharTotal GetNumActiveChar GetNumChar GetNumEliminated GetNumEquates GetNumIncludedChars GetNumMatrixCols GetNumMatrixRows GetNumObsStates GetNumStates GetNumUserEquates GetNxsTransformationManagerRef GetObsStates GetOriginalDataType GetSimpleContinuousValue GetState GetStateLabel GetStateLabel GetStatesFormat GetSymbols GetTaxonLabel HandleCharlabels HandleCharstatelabels HandleDimensions HandleEliminate HandleFormat HandleLinkCommand HandleMatrix HandleNextTokenState HandleStatelabels HandleStdMatrix HandleTransposedMatrix HasCharLabels IncludeCharacter IsActiveChar IsEliminated IsExcluded IsExcluded IsGapState IsInSymbols IsInterleave IsLabels IsMissingState IsPolymorphic IsRespectCase IsTokens IsTranspose mixed NewProteinCharactersBlock nucleotide NxsCharactersBlock protein Read Report Reset ResetSymbols rna SetAllowAugmentingOfSequenceSymbols SetConvertAugmentedToMixed SetGapModeSetting SetGapSymbol SetNexus SetSupportMixedDatatype ShowStateLabels ShowStates TaxonIndHasData TaxonLabelToNumber WasRestrictionDataype WriteAsNexus WriteLinkCommand WriteStates

NxsCharactersBlock::DataTypesEnum NxsCharactersBlock::GetDataType (  )  const [inline] Returns value of `datatype' from the datatype mapper. Returns: a facet of the DataTypesEnum that indicates the general type of data. Because symbols can be augmented non-default polymorphism codes can be introduced, this is not a complete description of the datatype encoding. If you want to test if the internal representation datatype of a NxsCharactersBlock has been modified use some form of this idiom: mapper = charBlock.GetDatatypeMapperForChar(0); const bool hasGaps = charBlock.GetGapSymbol() != ''; NxsDiscreteDatatypeMapper defaultMapper(NxsCharactersBlock::dna, hasGaps); if (mapper->IsSemanticallyEquivalent(&defaultMapper)) { the datatype has not been changed in a substantive way. } else { new state codes have been introduced, so routines that do not interrogate the mapper to check the mapper about the status of all of the states may fail. } This if you have told NCL to read augmented symbols list (SetAllowAugmentingOfSequenceSymbols) then it is possible that the datatype returned will be standard even if the GetOriginalDataType() returns a molecular sequence datatype. This means that the symbols list was augmented. Definition at line 1539 of file nxscharactersblock.h.