AddNewCodonPosPartition |
AddNewExSet |
AddNewIndexSet |
AddNewPartition |
ApplyExset |
ApplyIncludeset |
AugmentedSymbolsToMixed |
CharLabelToNumber |
CharLabelToNumber |
codon |
CodonPosPartitionToPosList |
Consume |
continuous |
DataTypesEnum |
DebugShowMatrix |
dna |
ExcludeCharacter |
GetAllDatatypeMappers |
GetAllowAugmentingOfSequenceSymbols |
GetCharLabel |
GetContinuousValues |
GetDataType |
GetDatatypeMapForMixedType |
GetDatatypeName |
GetDefaultCodonPosPartitionName |
GetDiscreteMatrixRow |
GetExcludedIndexSet |
GetGapModeSetting |
GetGapSymbol |
GetImpliedBlocks |
GetIndicesForLabel |
GetInternalRepresentation |
GetItems |
GetMatchcharSymbol |
GetMaximalStateSetOfColumn |
GetMaxObsNumStates |
GetMissingSymbol |
GetNamedStateSetOfColumn |
GetNChar |
GetNCharTotal |
GetNumActiveChar |
GetNumChar |
GetNumEliminated |
GetNumEquates |
GetNumIncludedChars |
GetNumMatrixCols |
GetNumMatrixRows |
GetNumObsStates |
GetNumStates |
GetNumUserEquates |
GetNxsTransformationManagerRef |
GetObsStates |
GetOriginalDataType |
GetSimpleContinuousValue |
GetState |
GetStateLabel |
GetStateLabel |
GetStatesFormat |
GetSymbols |
GetTaxonLabel |
HandleCharlabels |
HandleCharstatelabels |
HandleDimensions |
HandleEliminate |
HandleFormat |
HandleLinkCommand |
HandleMatrix |
HandleNextTokenState |
HandleStatelabels |
HandleStdMatrix |
HandleTransposedMatrix |
HasCharLabels |
IncludeCharacter |
IsActiveChar |
IsEliminated |
IsExcluded |
IsExcluded |
IsGapState |
IsInSymbols |
IsInterleave |
IsLabels |
IsMissingState |
IsPolymorphic |
IsRespectCase |
IsTokens |
IsTranspose |
mixed |
NewProteinCharactersBlock |
nucleotide |
NxsCharactersBlock |
protein |
Read |
Report |
Reset |
ResetSymbols |
rna |
SetAllowAugmentingOfSequenceSymbols |
SetConvertAugmentedToMixed |
SetGapModeSetting |
SetGapSymbol |
SetNexus |
SetSupportMixedDatatype |
ShowStateLabels |
ShowStates |
TaxonIndHasData |
TaxonLabelToNumber |
WasRestrictionDataype |
WriteAsNexus |
WriteLinkCommand |
WriteStates |