NxsCharactersBlock

AddNewCodonPosPartition AddNewExSet AddNewIndexSet AddNewPartition ApplyExset ApplyIncludeset AugmentedSymbolsToMixed CharLabelToNumber CharLabelToNumber codon CodonPosPartitionToPosList Consume continuous DataTypesEnum DebugShowMatrix dna ExcludeCharacter GetAllDatatypeMappers GetAllowAugmentingOfSequenceSymbols GetCharLabel GetContinuousValues GetDataType GetDatatypeMapForMixedType GetDatatypeName GetDefaultCodonPosPartitionName GetDiscreteMatrixRow GetExcludedIndexSet GetGapModeSetting GetGapSymbol GetImpliedBlocks GetIndicesForLabel GetInternalRepresentation GetItems GetMatchcharSymbol GetMaximalStateSetOfColumn GetMaxObsNumStates GetMissingSymbol GetNamedStateSetOfColumn GetNChar GetNCharTotal GetNumActiveChar GetNumChar GetNumEliminated GetNumEquates GetNumIncludedChars GetNumMatrixCols GetNumMatrixRows GetNumObsStates GetNumStates GetNumUserEquates GetNxsTransformationManagerRef GetObsStates GetOriginalDataType GetSimpleContinuousValue GetState GetStateLabel GetStateLabel GetStatesFormat GetSymbols GetTaxonLabel HandleCharlabels HandleCharstatelabels HandleDimensions HandleEliminate HandleFormat HandleLinkCommand HandleMatrix HandleNextTokenState HandleStatelabels HandleStdMatrix HandleTransposedMatrix HasCharLabels IncludeCharacter IsActiveChar IsEliminated IsExcluded IsExcluded IsGapState IsInSymbols IsInterleave IsLabels IsMissingState IsPolymorphic IsRespectCase IsTokens IsTranspose mixed NewProteinCharactersBlock nucleotide NxsCharactersBlock protein Read Report Reset ResetSymbols rna SetAllowAugmentingOfSequenceSymbols SetConvertAugmentedToMixed SetGapModeSetting SetGapSymbol SetNexus SetSupportMixedDatatype ShowStateLabels ShowStates TaxonIndHasData TaxonLabelToNumber WasRestrictionDataype WriteAsNexus WriteLinkCommand WriteStates

void NxsCharactersBlock::HandleMatrix ( NxsToken &  token  )  [protected, virtual] Called when MATRIX command needs to be parsed from within the CHARACTERS block. Deals with everything after the token MATRIX up to and including the semicolon that terminates the MATRIX command. Definition at line 4432 of file nxscharactersblock.cpp.